Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211154931|gb|FL392728.1|FL392728EST: ATTGTGGCTCCTCACTTCCGCGCCGCCACCCCCTTCAG GTAAGGAAGAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGA
genomic: ATTGTGGCTCCTCACTTCCGCGCCGCCACCCCCTTCAGgtgaatataa ... tctcctgcagGTAAGGAAGAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGA
EST:
gi|31361450|gb|CD445807.1|CD445807EST: GGCTCCTCACTTCCGCGCCGCCACCCCCTTCAG GTAAGGAAGAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGA
genomic: GGCTCCTCACTTCCGCGCCGCCACCCCCTTCAGgtgaatataa ... tctcctgcagGTAAGGAAGAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGA
EST:
gi|211060824|gb|FL422584.1|FL422584EST: ATTGTGGCTCCTCACTTCCGCGCCGCCACCCCCTTCAG GTAAGGAAGAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGA
genomic: ATTGTGGCTCCTCACTTCCGCGCCGCCACCCCCTTCAGgtgaatataa ... tctcctgcagGTAAGGAAGAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGA
EST:
gi|211494370|gb|FL425994.1|FL425994EST: GTGGCTCCTCACTTCCGCGCCGCCACCCCCTTCAG GTAAGGAAGAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCAC
genomic: GTGGCTCCTCACTTCCGCGCCGCCACCCCCTTCAGgtgaatataa ... tctcctgcagGTAAGGAAGAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCAC
EST:
gi|211078910|gb|FL369904.1|FL369904EST: AGCATTGTGGCTCCTCACTTCCGCGCCGCCACCCCCTTCAG GTAAGGAAGAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGA
genomic: AGCATTGTGGCTCCTCACTTCCGCGCCGCCACCCCCTTCAGgtgaatataa ... tctcctgcagGTAAGGAAGAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGA
EST:
gi|211171362|gb|FL404327.1|FL404327EST: GCATTGTGGCTCCTCACTTCCGCGCCGCCACCCCCTTCAG GTAAGGAAGAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCAC
genomic: GCATTGTGGCTCCTCACTTCCGCGCCGCCACCCCCTTCAGgtgaatataa ... tctcctgcagGTAAGGAAGAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gccgcccatgttgagctcgcgtcggatctgatgggcttgttgtgatctcctgcagGTAAGGAAGAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGAGGCACGGCTCCCTCGGCTTCCTTCCCAGGAAGCGCTCCTCCCGCCACCG
atctgat putative branch site (score: 4)
tctcctgc putative PPT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgaatataaggaatccgccgccggcgtcatctcctcctcccacctcgactcgccttgctcgccgtcggcggccatttcgtcgccgcgcggcgagccgcccatgttgagctcgcgtcggatctgatgggcttgttgtgatctcctgcagGTAAGGAAGAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGAGGCACGGCTCCCTCGGCTTCCTTCCCAGGAAGCGCTCCTCCCGCCACCG
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