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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgatgtgtgcctctccctgtccttattccgtccggacaccgacgaatgaactcgtccgtcctactatagctagctattgtctttgctcttctctgcttgttattatgccgccgtctaagcccacaacacaagccccagtttgtcatcacaggcacagcgagtgatgactgtgtactatttccctgcatgcagGCGGTGCCGCGGCGGGAACGGGTGCAAGGTCGGCGACGACAACGGCAGCCT

Basic information

species Zea mays
transcript GRMZM2G132251_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G132251_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os11g25920.1 (Oryza sativa), 3'ss of exon 1
gtatgtgatgtgtgcctctccctgtccttattccgtccggacaccgacgaatgaactcgtccgtcctactatagctagctattgtctttgctcttctctgcttgttattatgccgccgtctaagcccacaacacaagccccagtttgtcatcacaggcacagcgagtgatgactgtgtactatttccctgcatgcagGCGGTGCCGCGGCGGGAACGGGTGCAAGGTCGGCGACGACAACGGCAGCCT
                                                                                   || | ||  |  ||    |  |||  |  || || | | |        | ||| | |   | |  |||| |            |  |  || | || ||| ||   | |    |||||||||||||||| |||||||||||||||||||||||||||||||||||
-----------------------------------------------------------------------------------gtatgtgtaccacttaattaattaccacccctcc-tatgaatttttgcctcaaactctcatct--catctc------------ttctccctatata-tatgtcgtcgaa----gGCGGTGCCGCGGCGGCAACGGGTGCAAGGTCGGCGACGACAACGGCAGCCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149098917|gb|EE184930.2|EE184930
EST:     CTCAGCTCGGACTGGACGTACTCCGTCTTCTGGACCATCCGTCCTCGCCC                         GCGGTGCCGCGGCGGGAACGGGTGCAAGGTCGGCGACGACAACGGCAGCCT
genomic: CTCAGCTCGGACTGGACGTACTCCGTCTTCTGGACCATCCGTCCTCGCCCgtatgtgatg ... ctgcatgcagGCGGTGCCGCGGCGGGAACGGGTGCAAGGTCGGCGACGACAACGGCAGCCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttgtcatcacaggcacagcgagtgatgactgtgtactatttccctgcatgcagGCGGTGCCGCGGCGGGAACGGGTGCAAGGTCGGCGACGACAACGGCAGCCT
                                     ctatttccct  CT-rich tract
                                   tactattt  TA-rich tract