Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtgcgccactcccccccatcctcttgctgtctcgcgttggtgtacatgtttcactgatcactgattccatcggtgtggtcgcttcgacatgcagACATACCCGAACCCCCTCCAAGACAACCCGGCGTATTCAGTCGTCAA

Basic information

species Zea mays
transcript GRMZM2G132069_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G132069_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g09570.1 (Oryza sativa), 3'ss of exon 1
-------gtgcgtgcgccactcccccccatcctcttgctgtctcgcgttggtgtacatgtttcactgatcactgattccatcggtgtggtcgcttcgacatgcagACATACCCGAACCCCCTCCAAGACAACCCGGCGTATTCAGTCGTCAA
        || | |||   | ||  |  ||     ||| || |||  |||     |   ||||    | ||     ||    | |   || |||  ||  ||||||| |||||||| || || |||||||||||||| ||||||||||||||
tcaatttctgtgggcgatgcgcctactgattgagctgcagtatcgttttgac---cccatttcttgaagcaactgctcacctgctactgttgct--gatctgcagACTTACCCGAATCCTCTGCAAGACAACCCGGCTTATTCAGTCGTCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtacatgtttcactgatcactgattccatcggtgtggtcgcttcgacatgcagACATACCCGAACCCCCTCCAAGACAACCCGGCGTATTCAGTCGTCAA
                   cactgat  putative branch site (score: 3)
                                       tcgcttc  putative PPT