Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgaatactgaattcacatgttccagtgagaagtggtgcacttttttctcggcatttcacttggtggaatgtgcaagtaaatatttactcttttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTCAGACGCAATAAGAGCTATCTGCTTCAGTGTGAGTGGAGCTTTGTTTGCT

Basic information

species Zea mays
transcript GRMZM2G131998_T04
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78091377|gb|DV519751.1|DV519751
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|211051623|gb|FL294342.1|FL294342
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|211048677|gb|FL294338.1|FL294338
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTTATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|87156923|gb|DY401712.1|DY401712
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|211048668|gb|FL294329.1|FL294329
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|211048667|gb|FL294328.1|FL294328
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|89761079|gb|DY689237.1|DY689237
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|89249366|gb|DY621152.1|DY621152
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|211051635|gb|FL294354.1|FL294354
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|148936297|gb|EC880380.2|EC880380
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|211051624|gb|FL294343.1|FL294343
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|211051632|gb|FL294351.1|FL294351
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|71437750|gb|DR818800.1|DR818800
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|148959295|gb|EE010708.2|EE010708
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|211051631|gb|FL294350.1|FL294350
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|211048669|gb|FL294330.1|FL294330
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|211048680|gb|FL294341.1|FL294341
EST:     ACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: ACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCG-TGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|22546288|gb|BU098599.1|BU098599
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|4753448|gb|AI657358.1|AI657358
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|148945698|gb|EC890971.2|EC890971
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|148973467|gb|EE024565.2|EE024565
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|149081963|gb|EE171128.2|EE171128
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|211051633|gb|FL294352.1|FL294352
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTTATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|211048671|gb|FL294332.1|FL294332
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|211051625|gb|FL294344.1|FL294344
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|78106892|gb|DV525310.1|DV525310
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|211048673|gb|FL294334.1|FL294334
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|26558708|gb|CA830943.1|CA830943
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|211048679|gb|FL294340.1|FL294340
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|78081795|gb|DV510207.1|DV510207
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|20811129|gb|BQ295607.1|BQ295607
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|149111910|gb|EE191066.2|EE191066
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|89759711|gb|DY688443.1|DY688443
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|211048676|gb|FL294337.1|FL294337
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGNCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|148964964|gb|EE015811.2|EE015811
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|76017216|gb|DT944386.1|DT944386
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|50331437|gb|CO526563.1|CO526563
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|71771570|gb|DR969507.1|DR969507
EST:     AATTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 51

GCGGTGCGGCGGAGTTCGCGCCGGCGCTCGTCGCCGCCCACCCACACGGCAACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTCAGACGCAATAAGAGCTATCTGCTTCAGTGTGAGTGGAGCTTTGTTTGCT


Block sizes: 44 (upstream exon), 49 (downstream exon)
Score: 24

GCGGTGCGGCGGAGTTCGCGCCGGCGCTCGTCGCCGCCCACCCACACGGCAACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTCAGACGCAATAAGAGCTATCTGCTTCAGTGTGAGTGGAGCTTTGTTTGCT


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 28

GCGGTGCGGCGGAGTTCGCGCCGGCGCTCGTCGCCGCCCACCCACACGGCAACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTCAGACGCAATAAGAGCTATCTGCTTCAGTGTGAGTGGAGCTTTGTTTGCT


Block sizes: 44 (upstream exon), 46 (downstream exon)
Score: 24

GCGGTGCGGCGGAGTTCGCGCCGGCGCTCGTCGCCGCCCACCCACACGGCAACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTCAGACGCAATAAGAGCTATCTGCTTCAGTGTGAGTGGAGCTTTGTTTGCT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcggcatttcacttggtggaatgtgcaagtaaatatttactcttttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTCAGACGCAATAAGAGCTATCTGCTTCAGTGTGAGTGGAGCTTTGTTTGCT
                                   tatttactcttttcct  CT-rich tract
                               taaatatttactcttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgaatactgaattcacatgttccagtgagaagtggtgcacttttttctcggcatttcacttggtggaatgtgcaagtaaatatttactcttttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTCAGACGCAATAAGAGCTATCTGCTTCAGTGTGAGTGGAGCTTTGTTTGCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - -actgaat
- - - - - - - -catgttc
- - - - - - - - - - - - - - - -gtggtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgcaag