1 5' 3' | 2 5' 3' | 3 5' 3' |
...aaaatgttgatgggcttatgctgtaataagtagaaaagcaatcgtgcactttgtattggataatgtttagatatacggtaatcttgatatcctcttgcagTGCGCTGAGGGACCGACGCTTTCCCCCAATACAATCAAAGGAACTCCCAACCTTGGAGTGCACGGTATCTATACTCACTGATTATGAAATTGCAGAGGAC
species | Zea mays |
transcript | GRMZM2G131667_T04 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TATTTCACCGGCGAGCGGCCGCCGCCTCCCGCCTTCGAGGATGGAAACCA TGCGCTGAGGGACCGACGCTTTCCCCCAATACAATCAAAGGAACTCCCAAC
genomic: TATTTCACCGGCGAGCGGCCGCCGCCTCCCGCCTTCGAGGATGGAAACCAgtaagcctcc ... cctcttgcagTGCGCTGAGGGACCGACGCTTTCCCCCAATACAATCAAAGGAACTCCCAAC
gcactttgtattggataatgtttagatatacggtaatcttgatatcctcttgcagTGCGCTGAGGGACCGACGCTTTCCCCCAATACAATCAAAGGAACTCCCAACCTTGGAGTGCACGGTATCTATACTCACTGATTATGAAATTGCAGAGGAC
tcttgat putative branch site (score: 4)
tatcctctt CT-rich tract
ataatgtttagatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaatgttgatgggcttatgctgtaataagtagaaaagcaatcgtgcactttgtattggataatgtttagatatacggtaatcttgatatcctcttgcagTGCGCTGAGGGACCGACGCTTTCCCCCAATACAATCAAAGGAACTCCCAACCTTGGAGTGCACGGTATCTATACTCACTGATTATGAAATTGCAGAGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - tgttgat
- - - - - - - - tatgctg
- - - - - - - - - - - - - - -gtagaaaa
- - - - - - - - - - - - - - - - - - - - - cgtgcac
- - - - - - - - - - - - - - - - - - - - - - - - - -tgtattg