1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttggtttccgttacttcttgacagctgtactacatattggttttgtctgctgcctttactgaacaaattgtgtactgacctttttgtgtgtttcatgcagATGAATGTTGAAAAGCTCAAGAAGATGGCAGGTGCTGTGCGCACTGGGGGGAAGGGTAGCATGCGCAGGTGCTTATTTTTTTATATTCATCAAAGATGAC
species | Zea mays |
transcript | GRMZM2G131577_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATCCTCTCCTCACTCTCGCCGCCGCCGCTTCCCCTRCGCCCCGAGCCAAG ATGAATGTTGAAAAGCTCAAGAAGATRGCAGGTGCTGTGCGCACTGGGGGGEST: gi|148930264|gb|EC872736.2|EC872736
genomic: ATCCTCTCCTCACTCTCGCCGCCGCCGCTTCCCCTGCGCCCCGAGCCAAGgtgagctccc ... tttcatgcagATGAATGTTGAAAAGCTCAAGAAGATGGCAGGTGCTGTGCGCACTGGGGGG
EST: ATCCTCTCCTCACTCTCGCCGCCGCCGCTTCCCCTGCGCCCCGAGCCAAG ATGAATGTTGAAAAGCTCAAGAAGATGGCAGGTGCTGTGCGCACTGGGGGGEST: gi|37425074|gb|CF650272.1|CF650272
genomic: ATCCTCTCCTCACTCTCGCCGCCGCCGCTTCCCCTGCGCCCCGAGCCAAGgtgagctccc ... tttcatgcagATGAATGTTGAAAAGCTCAAGAAGATGGCAGGTGCTGTGCGCACTGGGGGG
EST: ATCCTCTCCTCACTCTCGCCGCCGCCGCTTCCCCTGCGCCCCGAGCCAAG ATGAATGTTGAAAAGCTCAAGAAGATGGCAGGTGCTGTGCGCACTGGGGGG
genomic: ATCCTCTCCTCACTCTCGCCGCCGCCGCTTCCCCTGCGCCCCGAGCCAAGgtgagctccc ... tttcatgcagATGAATGTTGAAAAGCTCAAGAAGATGGCAGGTGCTGTGCGCACTGGGGGG
tctgctgcctttactgaacaaattgtgtactgacctttttgtgtgtttcatgcagATGAATGTTGAAAAGCTCAAGAAGATGGCAGGTGCTGTGCGCACTGGGGGGAAGGGTAGCATGCGCAGGTGCTTATTTTTTTATATTCATCAAAGATGAC
tactgac putative branch site (score: 1)
aacaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggtttccgttacttcttgacagctgtactacatattggttttgtctgctgcctttactgaacaaattgtgtactgacctttttgtgtgtttcatgcagATGAATGTTGAAAAGCTCAAGAAGATGGCAGGTGCTGTGCGCACTGGGGGGAAGGGTAGCATGCGCAGGTGCTTATTTTTTTATATTCATCAAAGATGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG