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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcttaagggctacttttgcttctgtaatcattatgtgaacctttttacattggagcttgtcaatccctttgatttctctgcaccattcatatttttccagGTTATGACCAACAATGATTACTGCTTTTGACAGCTTCATAAAATCA

Basic information

species Zea mays
transcript GRMZM2G131489_T02
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78091629|gb|DV520003.1|DV520003
EST:     GATATTGCAGGTCTGGGAAGGGATCCTGTTGCTTTCGCAAACTACTTCAA                         GTTATGACCAACAATGATTACTGCTTTTGACAGCTTCATAAAATCA
genomic: GATATTGCAGGTCTGGGAAGGGATCCTGTTGCTTTCGCAAACTACTTCAAgtatgtcacc ... atttttccagGTTATGACCAACAATGATTACTGCTTTTGACAGCTTCATAAAATCA
EST: gi|78091368|gb|DV519742.1|DV519742
EST:     GATATTGCAGGTCTGGGAAGGGATCCTGTTGCTTTCGCAAACTACTTCAA                         GTTATGACCAACAATGATTACTGCTTTTGACAGCTTCATAAAATCA
genomic: GATATTGCAGGTCTGGGAAGGGATCCTGTTGCTTTCGCAAACTACTTCAAgtatgtcacc ... atttttccagGTTATGACCAACAATGATTACTGCTTTTGACAGCTTCATAAAATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacattggagcttgtcaatccctttgatttctctgcaccattcatatttttccagGTTATGACCAACAATGATTACTGCTTTTGACAGCTTCATAAAATCA
                     ctttgat  putative branch site (score: 5)
                                            tatttttcc  putative PPT
                                       attcatattttt  TA-rich tract