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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaaatcatatcaagttgtgatagatctgctatttcatcacacaacccagctgatttgtatgatgtccatgtaatgactgtcttgcttggttttctcatagATAATATTTTTCCCAGTAGAGGTGACATCTGCTATGCTTCAGGTCTATACTTCATCAGGTGATATGTTTTCCAAATCTAGAATGTTTGATAACACAGCCT

Basic information

species Zea mays
transcript GRMZM2G131440_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G131440_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g20420.2 (Oryza sativa), 3'ss of exon 12
aaaatcatatcaagttgtgatagatctgctatttcatcacacaacccagctgatttgtatgatgtccatgtaatgactgtcttgcttggttttctcatagATAATATTTTTCCCAGTAGAGGT-GACATCTGCTATGCTTCAGGTCTATACTTCATCAGGTGATATGTTTTCCAAATCTAGAATGTTTGATAACACAGCCT--------------
                                          ||   | ||   |||     | |  |  ||   |   |||    |   ||          ||||  ||     || ||  | |||||   || ||   ||||| ||||| ||||| |||||||||||||||||| | ||||||||||||| |||| ||               
----------------------------------------gtaattta-ctatattgctcagtctttacctagacaaaatctcatcttaattc------aggaatacctta---ggtggactttgacattatctctgtggcagGTTTATACATCATCTGGTGATATGTTTTCCAAAACAAGAATGTTTGATAGCACACCCCGCAGTGGACCCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccagctgatttgtatgatgtccatgtaatgactgtcttgcttggttttctcatagATAATATTTTTCCCAGTAGAGGTGACATCTGCTATGCTTCAGGTCTATACTTCATCAGGTGATATGTTTTCCAAATCTAGAATGTTTGATAACACAGCCT
  agctgat  putative branch site (score: 4)
                                            ttttctcat  putative PPT
       atttgtat  TA-rich tract