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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acattctatctactcactatattatttgtttcaacacacctctgaaactatcttttggtcaacgcatctcatgggctcattgcctattgactgcatacagGAGGGAAGGAACACCATATGGCCACATAATCCTCAAACAGGTTGGAGTTACTGTGTGATGATACCTTCTTGGATCACTCAAACACCTGAAACTGGTGTGA

Basic information

species Zea mays
transcript GRMZM2G131070_T03
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G131070_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os06g43560.1 (Oryza sativa), 3'ss of exon 1
acattcta---tctactcactatattat-ttgtttcaacaca--cctctgaaactatcttttggtcaacgcatctcatgggctcattgcctattgactgcatacagGAGGGAAGGAACACCATATGGCCACATAATCCTCAAACAGGTTGGAGTTACTGTGTGATGATACCTTCTTGGATCACTCAAACACCTGAAACTGGTGTGA
 || ||||   |   ||    | || ||    | |||| |     |  |||||   ||  ||| |  | || ||| | || || || || ||||||     | |||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||| |||||||||||| |||| ||||||||| || ||| ||
-caatctaggtttcgctggaaagatgatgccatatcaataggataccatgaaaagttccattgcttgatgcttcttacgg-cttat-gcttattgatc---tgcagGAGGGAAGGAACACCATATGGCCACATAACCCTCAAACCGGATGGAGTTACTGTGTGATGATTCCTTCTTGGATCGCTCAGACACCTGAAGCTAGTGCGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactatcttttggtcaacgcatctcatgggctcattgcctattgactgcatacagGAGGGAAGGAACACCATATGGCCACATAATCCTCAAACAGGTTGGAGTTACTGTGTGATGATACCTTCTTGGATCACTCAAACACCTGAAACTGGTGTGA
                                       tattgac  putative branch site (score: 2)