Sequence
atgc intronic sequence ATGC exonic sequence...acattctatctactcactatattatttgtttcaacacacctctgaaactatcttttggtcaacgcatctcatgggctcattgcctattgactgcatacagGAGGGAAGGAACACCATATGGCCACATAATCCTCAAACAGGTTGGAGTTACTGTGTGATGATACCTTCTTGGATCACTCAAACACCTGAAACTGGTGTGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G131070_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os06g43560.1 (Oryza sativa), 3'ss of exon 1
acattcta---tctactcactatattat-ttgtttcaacaca--cctctgaaactatcttttggtcaacgcatctcatgggctcattgcctattgactgcatacagGAGGGAAGGAACACCATATGGCCACATAATCCTCAAACAGGTTGGAGTTACTGTGTGATGATACCTTCTTGGATCACTCAAACACCTGAAACTGGTGTGA
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-caatctaggtttcgctggaaagatgatgccatatcaataggataccatgaaaagttccattgcttgatgcttcttacgg-cttat-gcttattgatc---tgcagGAGGGAAGGAACACCATATGGCCACATAACCCTCAAACCGGATGGAGTTACTGTGTGATGATTCCTTCTTGGATCGCTCAGACACCTGAAGCTAGTGCGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211302445|gb|FL244051.1|FL244051EST: CCTCGCCGTTGCCGCTCGGCATGGACTGGAGCCCTCCCCCGAAGAGATGG GAGGGAAGGAACACCATATGGCCACATAATCCTCAAACAGGTTGGAGTTAC
genomic: CCTCGCCGCTGCCGCTCGGCATGGACTGGAGCCCTCCCCCGAAGAGATGGgtaagcgccc ... ctgcatacagGAGGGAAGGAACACCATATGGCCACATAATCCTCAAACAGGTTGGAGTTAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aactatcttttggtcaacgcatctcatgggctcattgcctattgactgcatacagGAGGGAAGGAACACCATATGGCCACATAATCCTCAAACAGGTTGGAGTTACTGTGTGATGATACCTTCTTGGATCACTCAAACACCTGAAACTGGTGTGA
tattgac putative branch site (score: 2)