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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttacctttattatagtatttatttatatcctcatcttagtttgttccctgcagatatttggctgaaaaggccaatgctatctggatataccttcattatgatccctatacaaaacataactacagctaggttgtctaatttttgttttattttgtttgtttatcttcagGGTTGTTGGAGGTCTGCTTAGTTCATACGATCTATCTGGTGATAAAGTATTTCTTGATAAGGCTAAAGATATTACAGATCGACTCTTACCTGCTTGGGAT

Basic information

species Zea mays
transcript GRMZM2G130889_T03
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130889_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os04g51690.1 (Oryza sativa), 3'ss of exon 5
gtttacctttattatagtatttatttatatcctcatcttagtttgttccctgcagatatttggctgaaaaggccaatgctatctggatataccttcattatgatccctatacaaaacataactacagctaggttgtct--aatttttgttttattttgtttgtttatcttcagGGTTGTTGGAGGTCTGCTTAGTTCATACGATCTATCTGGTGATAAAGTATTTCTTGATAAGGCTAAAGATATTACAGATCGACTCTTACCTGCTTGGGAT
       |   |||||   |||| |   ||  |  |  || ||| || | |  | ||||||| ||     |  | ||||||| | |  | |||  ||||        | || || | | || || | |||| || |    | ||| |||||||||||       ||| ||||| ||||||||||| || || ||| |||| |||||||||||||| |||||||||||||| ||||| ||||||||||| || || ||  ||||||||||||||
-----gttgccttataaggtttact---attgttgtagtattttttttctta-aaatatttgacttctttgatcgatgctatgtaggcagacca-catt-------ttttagaacataaaagtatatctagttttttctaagtttctgttttatttt-------tatattcagAGTTGTTGGAGGCCTCCTCAGTGCATATGATCTATCTGGTGACAAAGTATTTCTTGAGAAGGCCAAAGATATTACTGACCGTCTACTACCTGCTTGGGAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cataactacagctaggttgtctaatttttgttttattttgtttgtttatcttcagGGTTGTTGGAGGTCTGCTTAGTTCATACGATCTATCTGGTGATAAAGTATTTCTTGATAAGGCTAAAGATATTACAGATCGACTCTTACCTGCTTGGGAT
                  gtctaat  putative branch site (score: 3)
                                            tttatcttc  putative PPT
                     taatttttgttttatt  TA-rich tract