Sequence
atgc intronic sequence ATGC exonic sequence...gtatcgtgtaagcaagcgtatcgtataagcaagtgcgattgtgcgaacattagttataaagtgttgcgcttcacgaaaatatattatcttattttattagAGGTCAAGAATCTGGGACCATGGGCAAAGGGGCTGCTGAAAGGCATGCCGCAGGCAGCGGCGGGACCGGCAGCCATGGCGCCTGTTGCGAAGTATCCGCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G130868_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g03110.1 (Oryza sativa), 3'ss of exon 1
gtatcgtgtaagcaagcgtatcgtataagcaagtgcgattgtgcgaacattagttataaagtgttgcgcttcacgaaaatatat-tatcttattttattagAGGTCAAGAATCTGGGACCATGGGCAAAGGGGCTGCTGAAAGGCATGCCGCAGGCAGCGGCGGGACCGGCAGCCATGGCGCCTGTTGCGAAGTATCCGCT---
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ctttgatggtagttatggttaaatattatcagctagtagtattctgg-actggtactaaacggttgtttttcttccttttttgtgtgaactgctactacagAAGTGAATAACTTGGGACCATGGGCGAAGGGGCTTCTGAAAGGGATGCCGGACTCGGCGGCAGGGCCAGCAG--AGGGC-CCCATCGCAAAGTATCCGCTGGTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30306498|gb|CD001171.1|CD001171EST: CTCGCTCGCCGACCTCGGAGGCGCGGCGAGGGAGATCGAAAGCGCACCAG AGGTCAAGAATCTGGGACCATGGGCAAAGGGGCTGCTGAAAGGCATGCCGC
genomic: CTCGCTCGCCGACCTCGGAGGCGCGGCGAGGGAGATCGAAAGCGCACCAGgtaccaccac ... attttattagAGGTCAAGAATCTGGGACCATGGGCAAAGGGGCTGCTGAAAGGCATGCCGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aacattagttataaagtgttgcgcttcacgaaaatatattatcttattttattagAGGTCAAGAATCTGGGACCATGGGCAAAGGGGCTGCTGAAAGGCATGCCGCAGGCAGCGGCGGGACCGGCAGCCATGGCGCCTGTTGCGAAGTATCCGCT
tcttatttt CT-rich tract
ttcacgaaaatatatt TA-rich tract