Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gctatgctgttttccctcaaaattttgcttcatcagagaatattgttttaccatgagattgagagctgttagctaatacttctattttggtttctgacagAGTCATGCAGGCCTTTTCAACCTATGTATTGTTGTTCTGGTTGCGGTGAATAGCAGGCTCATTATTGAGAACCTGATGAAG

Basic information

species Zea mays
transcript GRMZM2G130749_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130749_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os05g10810.1 (Oryza sativa), 3'ss of exon 1
gctatgctgttttccctcaaaattttgcttcatcagagaatattgttttaccatgagattg-agagctgttagctaatacttctattttgg--tttctgacagAGTCATGCAGGCCTTTTCAACCTATGTATTGTTGTTCTGGTTGCGGTGAATAGCAGGCTCATTATTGAGAACCTGATGAAG
  | | || |||  ||    | ||| |    | |      |  ||     |    |||||  ||  |||||  ||||||||||| ||||||  ||||  |||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||| ||||| |||||| | ||||||
--tgt-ctctttgtccatgtattttagagctagcttcattttctggaaggcttacagattacagctctgttccctaatacttctcttttggcatttccaacagAGTCATGCAGGCCTTTTCAACCTATGCATTGTTGTTCTAGTTGCAGTGAACAGCAGGCTTATTATCGAGAACTTAATGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149108049|gb|EE292403.2|EE292403
EST:     ACCGGAAAGCCAAGGAGAGCCCTCTGAGCTCCGACGCCATCTTCAAGCAG                         AGTCATGCAGGCCTTTTCAACCTATGTATTGTTGTTCTGGTTGCGGTGAAT
genomic: ACCGGAAAGCCAAGGAGAGCCCTCTGAGCTCCGACGCCATCTTCAAGCAGgtcagagcag ... tttctgacagAGTCATGCAGGCCTTTTCAACCTATGTATTGTTGTTCTGGTTGCGGTGAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttaccatgagattgagagctgttagctaatacttctattttggtttctgacagAGTCATGCAGGCCTTTTCAACCTATGTATTGTTGTTCTGGTTGCGGTGAATAGCAGGCTCATTATTGAGAACCTGATGAAG
                         agctaat  putative branch site (score: 3)
                                             tttct  putative PPT
                            taatacttctatttt  TA-rich tract