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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgctaaatgttatagcatttaccttgtggtttttgtacatcactgaatgttcagctgcaagttgaaaaatttttaatcctctattttattgtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT

Basic information

species Zea mays
transcript GRMZM2G130548_T03
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211067671|gb|FL012971.1|FL012971
EST:     TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|67010741|gb|CO439490.1|CO439490
EST:     TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|47961743|gb|CN844452.1|CN844452
EST:     TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|58030053|gb|CX725480.1|CX725480
EST:     TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|18649488|gb|BM498307.1|BM498307
EST:     TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|211067662|gb|FL012962.1|FL012962
EST:     TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|211067666|gb|FL012966.1|FL012966
EST:     TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|18649240|gb|BM498059.1|BM498059
EST:     CCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: CCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|211070402|gb|FL012977.1|FL012977
EST:     TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|211070409|gb|FL012984.1|FL012984
EST:     TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|211067664|gb|FL012964.1|FL012964
EST:     TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|211067667|gb|FL012967.1|FL012967
EST:     TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|211070406|gb|FL012981.1|FL012981
EST:     TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|111990559|gb|EE332006.1|EE332006
EST:     TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|29945355|gb|CB815597.1|CB815597
EST:     TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|211067670|gb|FL012970.1|FL012970
EST:     TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|5439382|gb|AI820303.1|AI820303
EST:     CGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: CGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|211067668|gb|FL012968.1|FL012968
EST:     TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|211070404|gb|FL012979.1|FL012979
EST:     TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|211064938|gb|FL012959.1|FL012959
EST:     TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|211070403|gb|FL012978.1|FL012978
EST:     TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|211067665|gb|FL012965.1|FL012965
EST:     TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|211067676|gb|FL012976.1|FL012976
EST:     TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|32793956|gb|CD946192.1|CD946192
EST:     GATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCTGTA
genomic: GATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCTGTA
EST: gi|45567900|gb|CK985803.1|CK985803
EST:     TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|211064940|gb|FL012961.1|FL012961
EST:     TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|9732626|gb|BE511378.1|BE511378
EST:     TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|211070408|gb|FL012983.1|FL012983
EST:     TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|87153170|gb|DY397959.1|DY397959
EST:     CAACAACATGGATGTCCTCGCGGG                         GCTTTTGGTTTCACTTGCGTATCCTCT
genomic: CAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|50337773|gb|CO532899.1|CO532899
EST:     TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|211070407|gb|FL012982.1|FL012982
EST:     TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|193503515|gb|AM937704.1|AM937704
EST:     TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|211064939|gb|FL012960.1|FL012960
EST:     TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|211070405|gb|FL012980.1|FL012980
EST:     TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|211383033|gb|FK976891.1|FK976891
EST:     TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTT-CGTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|91877109|gb|EB407066.1|EB407066
EST:     TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|211070410|gb|FL012985.1|FL012985
EST:     TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|32909041|gb|CF013853.1|CF013853
EST:     TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|211067675|gb|FL012975.1|FL012975
EST:     TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCC
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCC
EST: gi|211067674|gb|FL012974.1|FL012974
EST:     TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|5005775|gb|AI711837.1|AI711837
EST:     TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|211067672|gb|FL012972.1|FL012972
EST:     TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|211067663|gb|FL012963.1|FL012963
EST:     TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|32863713|gb|CF003395.1|CF003395
EST:     TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|211067669|gb|FL012969.1|FL012969
EST:     TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|18450405|gb|BM428683.1|BM428683
EST:     TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: gi|109179579|gb|EC380083.1|EC380083
EST:     TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG                         GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgttcagctgcaagttgaaaaatttttaatcctctattttattgtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
                         ttttaat  putative branch site (score: 3)
                ttgaaaaatttttaat  TA-rich tract