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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tattttttggtgttgtgtgatggtaaatactcctatatgtttatgtactgatgaattttgtgtggattacctaactgaggttttggtgttatgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGACCATGAGCAGCATAGGCACAGGTTATGATTTGTCTGTCACGACCTTCTCC

Basic information

species Zea mays
transcript GRMZM2G130398_T02
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148983025|gb|EE028929.2|EE028929
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|78081016|gb|DV509428.1|DV509428
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|211351912|gb|FL214804.1|FL214804
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|211421483|gb|FL073183.1|FL073183
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGCGAAGAGAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|71767052|gb|DR964989.1|DR964989
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|211351916|gb|FL214808.1|FL214808
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGCGAAGAGAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|149106947|gb|EE188848.2|EE188848
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|211354330|gb|FL214830.1|FL214830
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCG-CCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|211421481|gb|FL073181.1|FL073181
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGCGAAGAGAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|211349504|gb|FL214790.1|FL214790
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|211354321|gb|FL214821.1|FL214821
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGA-SC--NCGCCCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|148933477|gb|EC877180.2|EC877180
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|78089684|gb|DV518058.1|DV518058
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|211349502|gb|FL214788.1|FL214788
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|19770141|gb|BQ034862.1|BQ034862
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAG                         GAC-TGATCTACTACTCACTAGCGGTGTAGAGGCGAAGAGAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|149044661|gb|EE047635.2|EE047635
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|76913938|gb|DV165334.1|DV165334
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|28566562|gb|CB278210.1|CB278210
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGCGAAGAGAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|211351922|gb|FL214814.1|FL214814
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGCGAAGAGAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|78106940|gb|DV525358.1|DV525358
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|37417861|gb|CF646590.1|CF646590
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|148949401|gb|EC894858.2|EC894858
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|211349508|gb|FL214794.1|FL214794
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGCGAAGAGAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|211303552|gb|FL073177.1|FL073177
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|211354329|gb|FL214829.1|FL214829
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|211354322|gb|FL214822.1|FL214822
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGA-SC--NCGCCCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|29947590|gb|CB816734.1|CB816734
EST:     CGCAAGGCACTCGG-TCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
genomic: CGCAAGGC-CTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|76289822|gb|DV029390.1|DV029390
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|149081024|gb|EE170124.2|EE170124
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|76280505|gb|DV020073.1|DV020073
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|211349515|gb|FL214801.1|FL214801
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGCGAAGAGAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|211349514|gb|FL214800.1|FL214800
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGCGAAGAGAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|211354317|gb|FL214817.1|FL214817
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|211303549|gb|FL073174.1|FL073174
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGCGAAGAGAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|9254592|gb|BE345075.1|BE345075
EST:     CGCCGGAGGCGACCGCCCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGCGAAGAGAAGAACTTGAC
genomic: CGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|211354327|gb|FL214827.1|FL214827
EST:     TCGCAAGGCCTCGGTTCCATCCTTCCCCGGAGGCGACCGCCCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|211303550|gb|FL073175.1|FL073175
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAVVC--NCGCCCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|71317411|gb|DR795418.1|DR795418
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|211351924|gb|FL214816.1|FL214816
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGCGAAGAGAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|71449736|gb|DR830786.1|DR830786
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|148945160|gb|EC890360.2|EC890360
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|211421482|gb|FL073182.1|FL073182
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCC-GTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGCGAAGAGAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|211303551|gb|FL073176.1|FL073176
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTTAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGCGAAGAGAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|32862844|gb|CF002526.1|CF002526
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|211349507|gb|FL214793.1|FL214793
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATNAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|149009039|gb|EE041221.2|EE041221
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
EST: gi|211351915|gb|FL214807.1|FL214807
EST:     TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAG                         GACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC
genomic: TCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 435

CGCGACCGCCGACGCCCGACGGCAGGTGCACCAGGTCTTCGTCGACCCCTTCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGACCATGAGCAGCATAGGCACAGGTTATGATTTGTCTGTCACGACCTTCTCC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 205

CGCGACCGCCGACGCCCGACGGCAGGTGCACCAGGTCTTCGTCGACCCCTTCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGACCATGAGCAGCATAGGCACAGGTTATGATTTGTCTGTCACGACCTTCTCC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 173

CGCGACCGCCGACGCCCGACGGCAGGTGCACCAGGTCTTCGTCGACCCCTTCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGACCATGAGCAGCATAGGCACAGGTTATGATTTGTCTGTCACGACCTTCTCC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 251

CGCGACCGCCGACGCCCGACGGCAGGTGCACCAGGTCTTCGTCGACCCCTTCGCAAGGCCTCGGTTCCATCCTTCGCCGGAGGCGACCGCCCGTCAACAGgtatgctcac ... atgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGACCATGAGCAGCATAGGCACAGGTTATGATTTGTCTGTCACGACCTTCTCC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactgatgaattttgtgtggattacctaactgaggttttggtgttatgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGACCATGAGCAGCATAGGCACAGGTTATGATTTGTCTGTCACGACCTTCTCC
                       acctaac  putative branch site (score: 251)
                                              tgctttc  putative PPT
     atgaatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tattttttggtgttgtgtgatggtaaatactcctatatgtttatgtactgatgaattttgtgtggattacctaactgaggttttggtgttatgctttcagGACTTGATCTACTACTCACTAGCGGTGTAGAGGTGAAGATAAGAACTTGACCATGAGCAGCATAGGCACAGGTTATGATTTGTCTGTCACGACCTTCTCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG