Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tggacatttcattaacaatacgaacatgtttgtgataaatttgggtcactgcaaattcattagtatcttcctcacttggattggtgtgttattgtagcagGTAGAAGAGAATCGTGCCATTTGTCATGTCAGGAGGATCTTCACCATCATCAAGGCGAAACAGCTTTAATTCTTTGTCTAAGGACCTAGACCTTCCTTCA

Basic information

species Zea mays
transcript GRMZM2G130230_T03
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130230_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os04g40874.1 (Oryza sativa), 3'ss of exon 1
---------tggacatttcatt------aacaatacgaacatgtttgtgataaatttgggtcactgcaaattcattagtatcttcctcacttggattggtgtgttattgtagcagGTAGAAGAGAATCGTGCCATTTGTCATGTCAGGAGGATCTTCACCATCATCAAGGCGAAACAGCTTTAATTCTTTGTCTAAGGACCTAGACCTTCCTTCA
         |  |  || ||||      |    || |||  |  ||    |   ||  | |      ||  |   | | || || ||||| |        || | ||||  | ||| ||||||| | |   | |||| |||||||||||||||||||||||   ||||| |||| ||||||||||||||| || |  || |              
agccaattgtaaatgttccatttcaatgagttgtatgaaatttcttagcctgtgttccgatagtcttaagattgattgcatttttctcaccttttcacagGTAT-ATTGCTGAAGGAAGAAGAGCACCAACCTATTTATCATGTCAGGAGGATCTTCACCAAGGTCAAGACGAAGCAGCTTTAATTCTTTATCAAGAGATC--------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89757409|gb|DY687024.1|DY687024
EST:     GTTTCTCCGTCCGGTTCCGTCGTCGTCACAGCTACCTTTGCTCCGGCCCG                         GTAGAAGAGAATCGTGCCATTTGTCATGTCAGGAGGATCTTCACCATCATC
genomic: GTTTCTCCGTCCGGTTCCGTCGTCGTCACAGCTACCTTTGCTCCGGCCCGgtaaacggcg ... attgtagcagGTAGAAGAGAATCGTGCCATTTGTCATGTCAGGAGGATCTTCACCATCATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcactgcaaattcattagtatcttcctcacttggattggtgtgttattgtagcagGTAGAAGAGAATCGTGCCATTTGTCATGTCAGGAGGATCTTCACCATCATCAAGGCGAAACAGCTTTAATTCTTTGTCTAAGGACCTAGACCTTCCTTCA
                       tcctcac  putative branch site (score: 2)
       aaattcattagtat  TA-rich tract