Sequence
atgc intronic sequence ATGC exonic sequencegtatgcactgtccgtctgttcggtgaacgtcgttgggatttcattgccaaagtatcaggtttgaggggtggggatccacaaattaggtagctaaattgaagtcacccgcgctaagtcgcaaaagcagctatcaacctctctgaccgactctattcttgcttcccctctccccttctgtatcttcatgcagGGCTCAACCGGACAGGCAAGAGCTGCCGGCTGCGCTGGGTCAACTACCTCCACCCTGGCCTCAAGCGTGGGCGCATGTCTCCCCATGAAGAGCGACTCAT
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|67026346|gb|CO455095.1|CO455095EST: GAGAGGATACTCGCAAGGGGCCATGGACAGAGCAGGAGGACCTGCAACTG GGCTCAACCGGACAGGCAAGAGCTGCCGGCTGCGCTGGGTCAACTACCTCC
genomic: GAGAGGAGACTCGCAAGGGGCCATGGACAGAGCAGGAGGACCTGCAACTGgtatgcactg ... cttcatgcagGGCTCAACCGGACAGGCAAGAGCTGCCGGCTGCGCTGGGTCAACTACCTCC
EST:
gi|32851249|gb|CD990930.1|CD990930EST: GGACCTGC-ACTG GGCTCAACCGGACAGGCAAGAGCTGCCGGCTGCGCTGGGTCAACTACCTCC
genomic: GGACCTGCAACTGgtatgcactg ... cttcatgcagGGCTCAACCGGACAGGCAAGAGCTGCCGGCTGCGCTGGGTCAACTACCTCC
EST:
gi|67012428|gb|CO441177.1|CO441177EST: GACCTGCAACTG GGCTCAACCGGACAGGCAAGAGCTGCCGGCTGCGCTGGGTCAACTACCTCC
genomic: GACCTGCAACTGgtatgcactg ... cttcatgcagGGCTCAACCGGACAGGCAAGAGCTGCCGGCTGCGCTGGGTCAACTACCTCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctctctgaccgactctattcttgcttcccctctccccttctgtatcttcatgcagGGCTCAACCGGACAGGCAAGAGCTGCCGGCTGCGCTGGGTCAACTACCTCCACCCTGGCCTCAAGCGTGGGCGCATGTCTCCCCATGAAGAGCGACTCAT
ctctgac putative branch site (score: 3)
ctctattcttgcttcc putative PPT
tattctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgcactgtccgtctgttcggtgaacgtcgttgggatttcattgccaaagtatcaggtttgaggggtggggatccacaaattaggtagctaaattgaagtcacccgcgctaagtcgcaaaagcagctatcaacctctctgaccgactctattcttgcttcccctctccccttctgtatcttcatgcagGGCTCAACCGGACAGGCAAGAGCTGCCGGCTGCGCTGGGTCAACTACCTCCACCCTGGCCTCAAGCGTGGGCGCATGTCTCCCCATGAAGAGCGACTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA