1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atgagacaactgttctaagcatgttatcactaattgctttcatgttctttcaagatcacaattaattaatgtaatgtcttgtttctttcatcatttgaagATCTTGGGAGTTGAGAAGACTGCTTCACAACAAGAAATAAAGAAGGCATATCACAAATTGGCTCTGCGCCTCCATCCAGATAAGAATCCTGGGGATGAG
species | Zea mays |
transcript | GRMZM2G129987_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATGAGATGGCCGCCGCTCCTGCCGCCGCTGCGGGCAGGAGCCTCTACGAG ATCTTGGGAGTTGAGAAGACTGCTTCACAACAAGAAATAAAGAAGGCATATEST: gi|31628006|gb|CD526397.1|CD526397
genomic: ATGAGATGGCCGCCGCTCCTGCCGCCGCTGCGGGCAGGAGCCTCTACGAGgtaaggcacc ... tcatttgaagATCTTGGGAGTTGAGAAGACTGCTTCACAACAAGAAATAAAGAAGGCATAT
EST: ATGAGATGGCCGCCGCTCCTGCCGCCGCTGCGGGCAGGAGCCTCTACGAG ATCTTGGGAGTTGAGAAGACTGCTTCACAACAAGAAATAAAGAAGGCATATEST: gi|31664549|gb|CD573482.1|CD573482
genomic: ATGAGATGGCCGCCGCTCCTGCCGCCGCTGCGGGCAGGAGCCTCTACGAGgtaaggcacc ... tcatttgaagATCTTGGGAGTTGAGAAGACTGCTTCACAACAAGAAATAAAGAAGGCATAT
EST: ATGAGATGGCCGCCGCTCCTGCCGCCGCTGCGGGCAGGAGCCTCTACGAG ATCTTGGGAGTTGAGAAGACTGCTTCACAACAAGAAATAAAGAAGGCATATEST: gi|19436724|gb|BM953134.1|BM953134
genomic: ATGAGATGGCCGCCGCTCCTGCCGCCGCTGCGGGCAGGAGCCTCTACGAGgtaaggcacc ... tcatttgaagATCTTGGGAGTTGAGAAGACTGCTTCACAACAAGAAATAAAGAAGGCATAT
EST: ATGAGATGGCCGCCGCTCCTGCCGCCGCTGCGGGCAGGAGCCTCTACGAG ATCTTGGGAGTTGAGAAGACTGCTTCACAACAAGAAATAAAGAAGGCATATEST: gi|149009177|gb|EE041301.2|EE041301
genomic: ATGAGATGGCCGCCGCTCCTGCCGCCGCTGCGGGCAGGAGCCTCTACGAGgtaaggcacc ... tcatttgaagATCTTGGGAGTTGAGAAGACTGCTTCACAACAAGAAATAAAGAAGGCATAT
EST: ATGAGATGGCCGCCGCTCCTGCCGCCGCTGCGGGCAGGAGCCTCTACGAG ATCTTGGGAGTTGAGAAGACTGCTTCACAACAAGAAATAAAGAAGGCATATEST: gi|91053239|gb|EB163657.1|EB163657
genomic: ATGAGATGGCCGCCGCTCCTGCCGCCGCTGCGGGCAGGAGCCTCTACGAGgtaaggcacc ... tcatttgaagATCTTGGGAGTTGAGAAGACTGCTTCACAACAAGAAATAAAGAAGGCATAT
EST: ATGAGATGGCCGCCGCTCCTGCCGCCGCTGCGGGCAGGAGCCTCTACGAG ATCTTGGGAGTTGAGAAGACTGCTTCACAACAAGAAATAAAGAAGGCATATEST: gi|76011893|gb|DT939063.1|DT939063
genomic: ATGAGATGGCCGCCGCTCCTGCCGCCGCTGCGGGCAGGAGCCTCTACGAGgtaaggcacc ... tcatttgaagATCTTGGGAGTTGAGAAGACTGCTTCACAACAAGAAATAAAGAAGGCATAT
EST: ATGAGATGGCCGCCGCTCCTGCCGCCGCTGCGGGCAGGAGCCTCTACGAG ATCTTGGGAGTTGAGAAGACTGCTTCACAACAAGAAATAAAGAAGGCATATEST: gi|71771230|gb|DR969167.1|DR969167
genomic: ATGAGATGGCCGCCGCTCCTGCCGCCGCTGCGGGCAGGAGCCTCTACGAGgtaaggcacc ... tcatttgaagATCTTGGGAGTTGAGAAGACTGCTTCACAACAAGAAATAAAGAAGGCATAT
EST: ATGAGATGGCCGCCGCTCCTGCCGCCGCTGCGGGCAGGAGCCTCTACGAG ATCTTGGGAGTTGAGAAGACTGCTTCACAACAAGAAATAAAGAAGGCATATEST: gi|78082398|gb|DV510810.1|DV510810
genomic: ATGAGATGGCCGCCGCTCCTGCCGCCGCTGCGGGCAGGAGCCTCTACGAGgtaaggcacc ... tcatttgaagATCTTGGGAGTTGAGAAGACTGCTTCACAACAAGAAATAAAGAAGGCATAT
EST: ATGAGATGGCCGCCGCTCCTGCCGCCGCTGCGGGCAGGAGCCTCTACGAG ATCTTGGGAGTTGAGAAGACTGCTTCACAACAAGAAATAAAGAAGGCATATEST: gi|211448244|gb|FK956529.1|FK956529
genomic: ATGAGATGGCCGCCGCTCCTGCCGCCGCTGCGGGCAGGAGCCTCTACGAGgtaaggcacc ... tcatttgaagATCTTGGGAGTTGAGAAGACTGCTTCACAACAAGAAATAAAGAAGGCATAT
EST: ATGAGATGGCCGCCGCTCCTGCCGCCGCTGCGGGCAGGAGCCTCTACGAG ATCTTGGGAGTTGAGAAGACTGCTTCACAACAAGAAATAAAGAAGGCATATEST: gi|19057616|gb|BM736283.1|BM736283
genomic: ATGAGATGGCCGCCGCTCCTGCCGCCGCTGCGGGCAGGAGCCTCTACGAGgtaaggcacc ... tcatttgaagATCTTGGGAGTTGAGAAGACTGCTTCACAACAAGAAATAAAGAAGGCATAT
EST: ATGAGATGGCCGCCGCTCCTGCCGCCGCTGCGGGCAGGAGCCTCTACGAG ATCTTGGGAGTTGAGAAGACTGCTTCACAACAAGAAATAAAGAAGGCATATEST: gi|19436292|gb|BM952702.1|BM952702
genomic: ATGAGATGGCCGCCGCTCCTGCCGCCGCTGCGGGCAGGAGCCTCTACGAGgtaaggcacc ... tcatttgaagATCTTGGGAGTTGAGAAGACTGCTTCACAACAAGAAATAAAGAAGGCATAT
EST: TGAGATGGCCGCTCGCTCCTGCCGCCGCTGCGGGCAGGAGCCTCTACGAG ATCTTGGGAGTTGAGAAGACTGCTTCACAACAAGAAATAAAGAAGGCATATEST: gi|71320398|gb|DR796949.1|DR796949
genomic: TGAGATGGCCGC-CGCTCCTGCCGCCGCTGCGGGCAGGAGCCTCTACGAGgtaaggcacc ... tcatttgaagATCTTGGGAGTTGAGAAGACTGCTTCACAACAAGAAATAAAGAAGGCATAT
EST: ATGAGATGGCCGCCGCTCCTGCCGCCGCTGCGGGCAGGAGCCTCTACGAG ATCTTGGGAGTTGAGAAGACTGCTTCACAACAAGAAATAAAGAAGGCATATEST: gi|211448242|gb|FK956527.1|FK956527
genomic: ATGAGATGGCCGCCGCTCCTGCCGCCGCTGCGGGCAGGAGCCTCTACGAGgtaaggcacc ... tcatttgaagATCTTGGGAGTTGAGAAGACTGCTTCACAACAAGAAATAAAGAAGGCATAT
EST: ATGAGATGGCCGCCGCTCCTGCCGCCGCTGCGGGCAGGAGCCTCTACGAG ATCTTGGGAGTTGAGAAGACTGCTTCACAACAAGAAATAAAGAAGGCATATEST: gi|211450351|gb|FK956532.1|FK956532
genomic: ATGAGATGGCCGCCGCTCCTGCCGCCGCTGCGGGCAGGAGCCTCTACGAGgtaaggcacc ... tcatttgaagATCTTGGGAGTTGAGAAGACTGCTTCACAACAAGAAATAAAGAAGGCATAT
EST: ATGAGATGGCCGCCGCTCCTGCCGCCGCTGCGGGCAGGAGCCTCTACGAG ATCTTGGGAGTTGAGAAGACTGCTTCACAACAAGAAATAAAGAAGGCATATEST: gi|19436725|gb|BM953135.1|BM953135
genomic: ATGAGATGGCCGCCGCTCCTGCCGCCGCTGCGGGCAGGAGCCTCTACGAGgtaaggcacc ... tcatttgaagATCTTGGGAGTTGAGAAGACTGCTTCACAACAAGAAATAAAGAAGGCATAT
EST: ATGAGATGGCCGCCGCTCCTGCCGCCGCTGCGGGCAGGAGCCTCTACGAG ATCTTGGGAGTTGAGAAGACTGCTTCACAACAAGAAATAAAGAAGGCATATEST: gi|91054843|gb|EB165261.1|EB165261
genomic: ATGAGATGGCCGCCGCTCCTGCCGCCGCTGCGGGCAGGAGCCTCTACGAGgtaaggcacc ... tcatttgaagATCTTGGGAGTTGAGAAGACTGCTTCACAACAAGAAATAAAGAAGGCATAT
EST: ATGAGATGGCCGCCGCTCCTGCCGCCGCTGCGGGCAGGAGCCTCTACGAG ATCTTGGGAGTTGAGAAGACTGCTTCACAACAAGAAATAAAGAAGGCATATEST: gi|211448245|gb|FK956530.1|FK956530
genomic: ATGAGATGGCCGCCGCTCCTGCCGCCGCTGCGGGCAGGAGCCTCTACGAGgtaaggcacc ... tcatttgaagATCTTGGGAGTTGAGAAGACTGCTTCACAACAAGAAATAAAGAAGGCATAT
EST: ATGAGATGGCCGCCGCTCCTGCCGCCGCTGCGGGCAGGAGCCTCTACGAG ATCTTGGGAGTTGAGAAGACTGCTTCACAACAAGAAATAAAGAAGGCATATEST: gi|76924244|gb|DV169873.1|DV169873
genomic: ATGAGATGGCCGCCGCTCCTGCCGCCGCTGCGGGCAGGAGCCTCTACGAGgtaaggcacc ... tcatttgaagATCTTGGGAGTTGAGAAGACTGCTTCACAACAAGAAATAAAGAAGGCATAT
EST: AGGAGCCTCTACGAG ATCTTGGGAGTTGAGAAGACTGCTTCACAACAAGAAATAAAGAAGGCATATEST: gi|71315532|gb|DR794370.1|DR794370
genomic: AGGAGCCTCTACGAGgtaaggcacc ... tcatttgaagATCTTGGGAGTTGAGAAGACTGCTTCACAACAAGAAATAAAGAAGGCATAT
EST: ATGAGATGGCCGCCGCTCCTGCCGCCGCTGCGGGCAGGAGCCTCTACGAG ATCTTGGGAGTTGAGAAGACTGCTTCACAACAAGAAATAAAGAAGGCATAT
genomic: ATGAGATGGCCGCCGCTCCTGCCGCCGCTGCGGGCAGGAGCCTCTACGAGgtaaggcacc ... tcatttgaagATCTTGGGAGTTGAGAAGACTGCTTCACAACAAGAAATAAAGAAGGCATAT
tctttcaagatcacaattaattaatgtaatgtcttgtttctttcatcatttgaagATCTTGGGAGTTGAGAAGACTGCTTCACAACAAGAAATAAAGAAGGCATATCACAAATTGGCTCTGCGCCTCCATCCAGATAAGAATCCTGGGGATGAG
aattaat putative branch site (score: 68)
tcttgtttctttcatc putative PPT
atcacaattaattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgagacaactgttctaagcatgttatcactaattgctttcatgttctttcaagatcacaattaattaatgtaatgtcttgtttctttcatcatttgaagATCTTGGGAGTTGAGAAGACTGCTTCACAACAAGAAATAAAGAAGGCATATCACAAATTGGCTCTGCGCCTCCATCCAGATAAGAATCCTGGGGATGAG
- -agacaac
- - - - - - - - aagcatg
- - - - - - - - - - - - - - - - - tgctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - atcacaa