1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtcagtacgtgcccataacctgatccatttttttcatgaggagcaagctctttcccatcatctccctttgtggttcgtgaatctgtagcttgtttgtttctttttgcatgcagAGCTCGGATGGCGACATCATAGACTGTGTTCCCTCTCACCTCCAGCCCGCATTTGACCACCCAAAGCTCAGGGGCGAAAAGATTCTG
species | Zea mays |
transcript | GRMZM2G129947_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCAGGGCTCTGCTCACCAAGCTTAACAAGCCTGCTCTCAAGACTATCCAG AGCTCGGATGGCGACATCATAGACTGTGTTCCCTCTCACCTCCAGCCCGCAEST: gi|211485284|gb|FK951284.1|FK951284
genomic: TCAGGGCTCTGCTCACCAAGCTTAACAAGCCTGCTCTCAAGACTATCCAGgtcagtacgt ... ttgcatgcagAGCTCGGATGGCGACATCATAGACTGTGTTCCCTCTCACCTCCAGCCCGCA
EST: TCAGGGCTCTGCTCACCAAGCTTAACAAGCCTGCTCTCAAGACTATCCAG AGCTCGGATGGCGACATCATAGACTGTGTTCCCTCTCACCTCCAGCCCGCAEST: gi|149082901|gb|EE172133.2|EE172133
genomic: TCAGGGCTCTGCTCACCAAGCTTAACAAGCCTGCTCTCAAGACTATCCAGgtcagtacgt ... ttgcatgcagAGCTCGGATGGCGACATCATAGACTGTGTTCCCTCTCACCTCCAGCCCGCA
EST: TCAGGGCTCTGCTCACCAAGCTTAACAAGCCTGCTCTCAAGACTATCCAG AGCTCGGATGGCGACATCATAGACTGTGTTCCCTCTCACCTCCAGCCCGCAEST: gi|211485281|gb|FK951281.1|FK951281
genomic: TCAGGGCTCTGCTCACCAAGCTTAACAAGCCTGCTCTCAAGACTATCCAGgtcagtacgt ... ttgcatgcagAGCTCGGATGGCGACATCATAGACTGTGTTCCCTCTCACCTCCAGCCCGCA
EST: TCAGGGCTCTGCTCACCAAGCTTAACAAGCCTGCTCTCAAGACTATCCAG AGCTCGGATGGCGACATCATAGACTGTGTTCCCTCTCACCTCCAGCCCGCAEST: gi|148961279|gb|EE012002.2|EE012002
genomic: TCAGGGCTCTGCTCACCAAGCTTAACAAGCCTGCTCTCAAGACTATCCAGgtcagtacgt ... ttgcatgcagAGCTCGGATGGCGACATCATAGACTGTGTTCCCTCTCACCTCCAGCCCGCA
EST: TCAGGGCTCTGCTCACCAAGCTTAACAAGCCTGCTCTCAAGACTATCCAG AGCTCGGATGGCGACATCATAGACTGTGTTCCCTCTCACCTCCAGCCCGCAEST: gi|149108565|gb|EE292844.2|EE292844
genomic: TCAGGGCTCTGCTCACCAAGCTTAACAAGCCTGCTCTCAAGACTATCCAGgtcagtacgt ... ttgcatgcagAGCTCGGATGGCGACATCATAGACTGTGTTCCCTCTCACCTCCAGCCCGCA
EST: TCAGGGCTCTGCTCACCAAGCTTAACAAGCCTGCTCTCAAGACTATCCAG AGCTCGGATGGCGACATCATAGACTGTGTTCCCTCTCACCTCCAGCCCGCAEST: gi|148941625|gb|EC886565.2|EC886565
genomic: TCAGGGCTCTGCTCACCAAGCTTAACAAGCCTGCTCTCAAGACTATCCAGgtcagtacgt ... ttgcatgcagAGCTCGGATGGCGACATCATAGACTGTGTTCCCTCTCACCTCCAGCCCGCA
EST: TCAGGGCTCTGCTCACCAAGCTTAACAAGCCTGCTCTCAAGACTATCCAG AGCTCGGATGGCGACATCATAGACTGTGTTCCCTCTCACCTCCAGCCCGCAEST: gi|148999499|gb|EE036464.2|EE036464
genomic: TCAGGGCTCTGCTCACCAAGCTTAACAAGCCTGCTCTCAAGACTATCCAGgtcagtacgt ... ttgcatgcagAGCTCGGATGGCGACATCATAGACTGTGTTCCCTCTCACCTCCAGCCCGCA
EST: TCAGGGCTCTGCTCACCAAGCTTAACAAGCCTGCTCTCAAGACTATCCAG AGCTCGGATGGCGACATCATAGACTGTGTTCCCTCTCACCTCCAGCCCGCA
genomic: TCAGGGCTCTGCTCACCAAGCTTAACAAGCCTGCTCTCAAGACTATCCAGgtcagtacgt ... ttgcatgcagAGCTCGGATGGCGACATCATAGACTGTGTTCCCTCTCACCTCCAGCCCGCA
catctccctttgtggttcgtgaatctgtagcttgtttgtttctttttgcatgcagAGCTCGGATGGCGACATCATAGACTGTGTTCCCTCTCACCTCCAGCCCGCATTTGACCACCCAAAGCTCAGGGGCGAAAAGATTCTG
cttgtttgtttctttt CT-rich tract
tttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtacgtgcccataacctgatccatttttttcatgaggagcaagctctttcccatcatctccctttgtggttcgtgaatctgtagcttgtttgtttctttttgcatgcagAGCTCGGATGGCGACATCATAGACTGTGTTCCCTCTCACCTCCAGCCCGCATTTGACCACCCAAAGCTCAGGGGCGAAAAGATTCTG
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