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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaacttagtcctttggcctaattacctgaatgttttttttgggtagtattactaacatttgacagtattgtttgccttcacagCCTGGGCCTCGAGACGGGATGATTCAGTGTTTCATAAAGCGCGATAAATCCAAGTCCACGTATCGTCTCTACTTGTGCCTGAGTACTG

Basic information

species Zea mays
transcript GRMZM2G129288_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G129288_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os05g36190.1 (Oryza sativa), 3'ss of exon 2
-------------------------------------------------------gtaaaacttagtcctttggcc-taattacctg--aatgttttttttgggta-------gtattactaacatttgacagtattgtttgccttcacagCCTGGGCCTCGAGACGGGATGATTCAGTGTTTCATAAAGCGCGATAAATCCAAGTCCACGTATCGTCTCTACTTGTGCCTGAGTACTG
                                                        || |  || || | || |   ||   |||||  | |||  || |||  ||       ||    || | |||    |   ||||||    |  |||||||| |||||||| || |||||||| |||||||||||||| |||||||| || || || |||| |||||||||||||||||||||||
gtaaaatttcacatcctgtaatgaaagcagaacttaaactgactgttgttaagaattatattttcgtaccttagtgatagcaacctgcaagtgtggttgttgcttattcatttgttcctctcaaattcataatccttgttttgactttcagCCTGGCCCTCGAGATGGAATGATTCAATGTTTCATAAAGCGGGATAAATCTAAATCAACTTATCATCTCTACTTGTGCCTGAGTACTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71426772|gb|DR807822.1|DR807822
EST:     TCAGCCCGGAGGTCTGCGGGAAGCTTACCTTCCCGGTCTCTCTCAAGCAG                         CCTGGGCCTCGAGACGGGATGATTCAGTGTTTCATAAAGCGCGATAAATCC
genomic: TCAGCCCGGAGGTCTGCGGGAAGCTTACCTTCCCGGTCTCTCTCAAGCAGgtaaaactta ... gccttcacagCCTGGGCCTCGAGACGGGATGATTCAGTGTTTCATAAAGCGCGATAAATCC
EST: gi|149111284|gb|EE294782.2|EE294782
EST:     TCAGCCCGGAGGTCTGCGGGAAGCTTACCTTCCCGGTCTCTCTCAAGCAG                         CCTGGGCCTCGAGACGGGATGATTCAGTGTTTCATAAAGCGCGATAAATCC
genomic: TCAGCCCGGAGGTCTGCGGGAAGCTTACCTTCCCGGTCTCTCTCAAGCAGgtaaaactta ... gccttcacagCCTGGGCCTCGAGACGGGATGATTCAGTGTTTCATAAAGCGCGATAAATCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgttttttttgggtagtattactaacatttgacagtattgtttgccttcacagCCTGGGCCTCGAGACGGGATGATTCAGTGTTTCATAAAGCGCGATAAATCCAAGTCCACGTATCGTCTCTACTTGTGCCTGAGTACTG
                                          tttgccttc  CT-rich tract
                  tattactaacattt  TA-rich tract