Skip to another splice site:
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 5'  3'   		5  
 5'  3'   		6  
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 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcgatcccctccgacccgtctccttcacccgccgggatttaatctcgcgtagcctcaccgtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG

Basic information

species Zea mays
transcript GRMZM2G128995_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128995_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os05g51530.1 (Oryza sativa), 3'ss of exon 1
gtaagcgatcccctccgacccgtctccttca------cccgccgggat--ttaatctcgcgtagcctcaccgtc-----cgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG
|||||| |||| | ||| |     ||||||       ||  |||  |     |  ||| |    |  | ||| |     | |||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||| ||||| |||||||||
gtaagc-atcctccccgccttccttccttccttccttccttccgccaccaccatcctcaccctcctcctccgcctcccgcccgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG

upper sequence: GRMZM2G128995_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA02G07260.1 (Glycine max), 3'ss of exon 1
-----------------------gtaagcgatcccctccgacccgtctccttcacccgccgggatttaatctcgcgtagcctcaccgtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG
                        | |    |    |   |||     ||  | | | |    | ||   ||| | |   | | ||     ||||||||||| ||||  ||||||||||||| ||||| ||||| |||||| | ||||| |||||   |||||||
gtaagtactctctctctctacacatcactttttttttataaccaacgaccaccgcgc-ctcttacttttcctctcattttccctccaaattcgcagTTCAACATCCCCAATCTCCGCGTCGGAACCCTAGACTCCCTCCTCTCCCTCAGCGACGATACCGTCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211217327|gb|FL397497.1|FL397497
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211240466|gb|FL378083.1|FL378083
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211131976|gb|FL391859.1|FL391859
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211526764|gb|FL372694.1|FL372694
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211031812|gb|FL374016.1|FL374016
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211034476|gb|FL382040.1|FL382040
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211478907|gb|FL382317.1|FL382317
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211331894|gb|FL371096.1|FL371096
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211136925|gb|FL422189.1|FL422189
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211045930|gb|FL419466.1|FL419466
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211196623|gb|FL384762.1|FL384762
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211377201|gb|FL412470.1|FL412470
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211350528|gb|FL378240.1|FL378240
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|87153287|gb|DY398076.1|DY398076
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACATCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211520923|gb|FL381010.1|FL381010
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|31363830|gb|CD448185.1|CD448185
EST:     GCCTCCAGGACTCCATCTCCCGCCACTGCTGGGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211441636|gb|FL403705.1|FL403705
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211023088|gb|FL427788.1|FL427788
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|71427970|gb|DR809020.1|DR809020
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211042213|gb|FL387605.1|FL387605
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|148954149|gb|EC899548.2|EC899548
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211327966|gb|FL399630.1|FL399630
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211539519|gb|FL409049.1|FL409049
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|31348626|gb|CD432983.1|CD432983
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211532950|gb|FL381081.1|FL381081
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211065673|gb|FL393994.1|FL393994
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|19351525|gb|BM896057.1|BM896057
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACATCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211363177|gb|FL385284.1|FL385284
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211493010|gb|FL369795.1|FL369795
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|67032136|gb|CO460885.1|CO460885
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211317751|gb|FL419307.1|FL419307
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211363428|gb|FL397063.1|FL397063
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|148968978|gb|EE019672.2|EE019672
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211452191|gb|FL398498.1|FL398498
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211247493|gb|FL399189.1|FL399189
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211452273|gb|FL403779.1|FL403779
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211504705|gb|FL413781.1|FL413781
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|67018576|gb|CO447325.1|CO447325
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGGTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|149010225|gb|EE042044.2|EE042044
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211413494|gb|FL407160.1|FL407160
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211288089|gb|FL387847.1|FL387847
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|149000734|gb|EE037952.2|EE037952
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211352988|gb|FL379679.1|FL379679
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGSTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGTCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|149098811|gb|EE184822.2|EE184822
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211206907|gb|FL385660.1|FL385660
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|15312764|gb|BI478361.1|BI478361
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211057980|gb|FL426570.1|FL426570
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211169417|gb|FL381630.1|FL381630
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211212618|gb|FL412314.1|FL412314
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|148963815|gb|EE014912.2|EE014912
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211264685|gb|FL426671.1|FL426671
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAASGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211301307|gb|FL411052.1|FL411052
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211319940|gb|FL427662.1|FL427662
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211461106|gb|FL380550.1|FL380550
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|78076482|gb|DV504916.1|DV504916
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211141724|gb|FL403003.1|FL403003
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211017234|gb|FL404253.1|FL404253
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211003766|gb|FL418085.1|FL418085
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211229673|gb|FL386151.1|FL386151
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211202638|gb|FL424402.1|FL424402
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTMTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccgtctccttcacccgccgggatttaatctcgcgtagcctcaccgtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG
                                     gcctcac  putative branch site (score: 3)
                      atttaatct  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagcgatcccctccgacccgtctccttcacccgccgggatttaatctcgcgtagcctcaccgtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC