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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gggaatgtgtagtctttggaatgagctgcactaataaataacttgtgaaacaacatttgtggtttattaagaatattttatattcttgtattgtttgtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT

Basic information

species Zea mays
transcript GRMZM2G128877_T04
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128877_T02 (Zea mays), 3'ss of exon 17
lower sequence: LOC_Os02g07870.1 (Oryza sativa), 3'ss of exon 17
gggaatgtgtagtctttggaatgagctgcactaataaataact-tgtgaaa-caacatttgtggtttattaagaatattttatattcttgtattgttt-gtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT
  |  |    | |  |    || |     | ||  | ||  |  |   |||  | |||  ||  | | |||| |||    | ||| ||| ||||||||  ||||| |||||||||||||||||| ||||||| || ||||| |||||| |||||||||| || ||  ||||||||||||| || ||||||||
ttgtttactcattactcaatataattacaaataggatattcccatacaaaagtagcataagtactattttaataat---ctgtatgcttttattgttttatagGCGGTGGAGCGGGCAGCTGGTGCTGATGGACAGAAGATTACATACAGTGTCATAAAGCATCGCATGGGCGATCTATTCTACCGCCTAGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67018748|gb|CO447497.1|CO447497
EST:     CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG                         GCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
genomic: CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
EST: gi|5871663|gb|AW018134.1|AW018134
EST:     CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG                         GCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
genomic: CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
EST: gi|4630580|gb|AI621454.1|AI621454
EST:     ATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG                         GCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
genomic: ATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
EST: gi|5770168|gb|AI973342.1|AI973342
EST:     CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG                         GCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
genomic: CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
EST: gi|5804554|gb|AI979524.1|AI979524
EST:     CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG                         GCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
genomic: CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
EST: gi|4646572|gb|AI491316.2|AI491316
EST:     CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG                         GCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
genomic: CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
EST: gi|4572998|gb|AI586647.1|AI586647
EST:     CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG                         GCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
genomic: CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
EST: gi|67018094|gb|CO446843.1|CO446843
EST:     CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG                         GCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
genomic: CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
EST: gi|61236472|gb|DN586224.1|DN586224
EST:     TGGC-AATCAG                         GCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
genomic: TGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaaacaacatttgtggtttattaagaatattttatattcttgtattgtttgtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT
                 tttattaagaatattt  TA-rich tract