Sequence
atgc intronic sequence ATGC exonic sequence...gttccatttaatgtattcaacttagcagccagaactccttttgtctgtctgttgcctttctcctgtatatgcaatttacttgaaataatattgtttccagTCTCAAATAATTGAGGCGCTTGGAGCTACTGTTGAACGAGTGCGCCCTGTTTCAATAACTCACAGAGACCATTTTGTCAACATTGCCAGAAGAAGGGCTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G128744_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g11660.1 (Oryza sativa), 3'ss of exon 3
gttccatttaatgtattcaacttagcagccagaactcc---ttttgtctgtctg---ttgcct-ttctcctgtatatgcaatttacttgaaataatattgtttccagTCTCAAATAATTGAGGCGCTTGGAGCTACTGTTGAACGAGTGCGCCCTGTTTCAATAACTCACAGAGACCATTTTGTCAACATTGCCAGAAGAAGGGCTT
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----tgttaagattgttccaaagtacaaacagtatttcaacatcagaaagcctgtaattgcttatgctcctgtatgtttagttttactaaaact---cttttcacagTCTCAAATAATCGAGGCGCTCGGGGCTACAGTTGAACGAGTGCGCCCTGTTTCAATTACACATAGGGACCATTTTGTCAATATTGCTAGAAGAAGGGCTT
upper sequence: GRMZM2G128744_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA02G46950.1 (Glycine max), 3'ss of exon 5
-----gttccatttaatgtattcaacttagcagccagaact-ccttttgtctgtctgttgcctttctcctgtatatgcaatttacttgaaataatattgtttccagTCTCAAATAATTGAGGCGCTTGGAGCTACTGTTGAACGAGTGCGCCCTGTTTCAATAACTCACAGAGACCATTTTGTCAACATTGCCAGAAGAAGGGCTT---------------------------------------
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gtattttataatcaagcaaactctattgtgaaattaatatagccataaatctctctaagatttgtatgtgatttatg--attgtcttgtgttaac-caaccttcagtctcaaatacttgaagcccttggggcaactgttgaaagAGTGAGACCGGTGTCCATTACCCACAAAGACCATTTTGTCAA-ATCGCAAGAAGACGGGCATCTGAAGCAAATGAGTTTGCATTGAAGCGTACAAATTCAC
upper sequence: GRMZM2G128744_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA14G01780.2 (Glycine max), 3'ss of exon 3
gttccatttaatgtattcaacttagcagccagaactcctttt----gtctgtctgttgcctttc----tcctgtatatg-----caatttacttgaaataatattgtttccagTCTCAAATAATTGAGGCGCTTGGAGCTACTGTTGAACGAGTGCGCCCTGTTTCAATAACTCACAGAGACCATTTTGTCAACATTGCCAGAAGAAGGGCTT
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gtattttataatggttttaatgtaatcatgtaaattctgttatgaaatctagccataaacctctaagattttgtgtacaattgatgattggcttgcgtgaat-caaccttcagTCTCAAATACTTGAAGCCCTTGGGGCAACTGTTGAAAGAGTGAGACCGGTGTCCATCACCCACAAAGACCATTTTGTCAATATTGCAAGAAGACGGGCAT
upper sequence: GRMZM2G128744_T01 (Zea mays), 3'ss of exon 1
lower sequence: AT1G55880.1 (Arabidopsis thaliana), 3'ss of exon 3
gttccatttaatgtattcaacttagcagccagaactccttttgtctgtctgttgcctttctcctgtatatgcaatttacttgaaataatattgtttccagTCTCAAATAATTGAGGCGCTTGGAGCTACTGTTGAACGAGTGCGCCCTGTTTCAATAACTCACAGAGACCATTTTGTCAACATTGCCAGAAGAAGGGCTT
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gttatatct--tttaaataccttgatgat--gattcaaattcccttgtatgcattattgtacatacactca-aatttgtatcgtgttggacttattttagTCTCAAATAATTGAAGCCCTTGGAGCTTCTGTTGAGAGAGTGAGGCCAGTGTCAATAACTCACAAGGATCACTATGTCAACATTGCGAGGCGACGGGCTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtctgttgcctttctcctgtatatgcaatttacttgaaataatattgtttccagTCTCAAATAATTGAGGCGCTTGGAGCTACTGTTGAACGAGTGCGCCCTGTTTCAATAACTCACAGAGACCATTTTGTCAACATTGCCAGAAGAAGGGCTT
ttgtttcc CT-rich tract
tatatgcaatttactt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttccatttaatgtattcaacttagcagccagaactccttttgtctgtctgttgcctttctcctgtatatgcaatttacttgaaataatattgtttccagTCTCAAATAATTGAGGCGCTTGGAGCTACTGTTGAACGAGTGCGCCCTGTTTCAATAACTCACAGAGACCATTTTGTCAACATTGCCAGAAGAAGGGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG