1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgacccgctcttctgttcctccgccacccgccccgcgcggcgcgctgcttgtgatcgtcgttgatctcttgtggtccctctctcgccctgcagCCGACGGAGGAATTCAGGAATGTGGTGTTTGGGGGGCAGCTCACGGAGGGGGCCGACGGCCTCAACAAGACGAAGAG
species | Zea mays |
transcript | GRMZM2G128491_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCCTCACCCCGATGGCGCCGGGTCGCTGCCAGCACGCCGGCCTAACCAG CCGACGGAGGAATTCAGGAATGTGGTGTTTGGGGGGCAGCTCACGGAGGGGEST: gi|71307158|gb|DR789750.1|DR789750
genomic: GGCCTCACCCCGATGGCGCCGGGTCGCTGCCAGCACGCCGGCCTAACCAGgtgacccgct ... cgccctgcagCCGACGGAGGAATTCAGGAATGTGGTGTTTGGGGGGCAGCTCACGGAGGGG
EST: GGCCTCACCCCGATGGCGCCGGGTCGCTGCCAGCACGCCGGCCTAACCAG CCGACGGAGGAATTCAGGAATGTGGTGTTTGGGGGGCAGCTCACGGAGGGGEST: gi|148956639|gb|EC902493.2|EC902493
genomic: GGCCTCACCCCGATGGCGCCGGGTCGCTGCCAGCACGCCGGCCTAACCAGgtgacccgct ... cgccctgcagCCGACGGAGGAATTCAGGAATGTGGTGTTTGGGGGGCAGCTCACGGAGGGG
EST: GGCCTCACCCCGATGGCGCCGGGTCGCTGCCAGCACGCCGGCCTAACCAG CCGACGGAGGAATTCAGGAATGTGGTGTTTGGGGGGCAGCTCACGGAGGGGEST: gi|9254985|gb|BE345453.1|BE345453
genomic: GGCCTCACCCCGATGGCGCCGGGTCGCTGCCAGCACGCCGGCCTAACCAGgtgacccgct ... cgccctgcagCCGACGGAGGAATTCAGGAATGTGGTGTTTGGGGGGCAGCTCACGGAGGGG
EST: GGCCTCACCCCGATGGCGCCGGGTCGCTGCCAGCACGCCGGCCTAACCAG CCGACGGAGGAATTCAGGAATGTGGTGTTTGGGGGGCAGCTCACGGAGGGGEST: gi|78114333|gb|DV532722.1|DV532722
genomic: GGCCTCACCCCGATGGCGCCGGGTCGCTGCCAGCACGCCGGCCTAACCAGgtgacccgct ... cgccctgcagCCGACGGAGGAATTCAGGAATGTGGTGTTTGGGGGGCAGCTCACGGAGGGG
EST: GGCCTCACCCCGATGGCGCCGGGTCGCTGCCAGCACGCCGGCCTAACCAG CCGACGGAGGAATTCAGGAATGTGGTGTTTGGGGGGCAGCTCACGGAGGGGEST: gi|71430885|gb|DR811935.1|DR811935
genomic: GGCCTCACCCCGATGGCGCCGGGTCGCTGCCAGCACGCCGGCCTAACCAGgtgacccgct ... cgccctgcagCCGACGGAGGAATTCAGGAATGTGGTGTTTGGGGGGCAGCTCACGGAGGGG
EST: GGCCTCACCCCGATGGCGCCGGGTCGCTGCCAGCACGCCGGCCTAACCAG CCGACGGAGGAATTCAGGAATGTGGTGTTTGGGGGGCAGCTCACGGAGGGGEST: gi|211018202|gb|FL215892.1|FL215892
genomic: GGCCTCACCCCGATGGCGCCGGGTCGCTGCCAGCACGCCGGCCTAACCAGgtgacccgct ... cgccctgcagCCGACGGAGGAATTCAGGAATGTGGTGTTTGGGGGGCAGCTCACGGAGGGG
EST: GGCCTCACCCCGATGGCGCCGGGTCGCTGCCAGCACGCCGGCCTAACCAG CCGACGGAGGAATTCAGGAATGTGGTGTTTGGGGGGCAGCTCACGGAGGGGEST: gi|78118764|gb|DV537148.1|DV537148
genomic: GGCCTCACCCCGATGGCGCCGGGTCGCTGCCAGCACGCCGGCCTAACCAGgtgacccgct ... cgccctgcagCCGACGGAGGAATTCAGGAATGTGGTGTTTGGGGGGCAGCTCACGGAGGGG
EST: GGCCTCACCCCGATGGCGCCGGGTCGCTGCCAGCACGCCGGCCTAACCAG CCGACGGAGGAATTCAGGAATGTGGTGTTTGGGGGGCAGCTCACGGAGGGGEST: gi|211015418|gb|FL215877.1|FL215877
genomic: GGCCTCACCCCGATGGCGCCGGGTCGCTGCCAGCACGCCGGCCTAACCAGgtgacccgct ... cgccctgcagCCGACGGAGGAATTCAGGAATGTGGTGTTTGGGGGGCAGCTCACGGAGGGG
EST: GGCCTCACCCCGATGGCGCCGGGTCGCTGCCAGCACGCCGGCCTAACCAG CCGACGGAGGAATTCAGGAATGTGGTGTTTGGGGGGCAGCTCACGGAGGGGEST: gi|211018200|gb|FL215890.1|FL215890
genomic: GGCCTCACCCCGATGGCGCCGGGTCGCTGCCAGCACGCCGGCCTAACCAGgtgacccgct ... cgccctgcagCCGACGGAGGAATTCAGGAATGTGGTGTTTGGGGGGCAGCTCACGGAGGGG
EST: GGCCTCACCCCGATGGCGCCGGGTCGCTGCCAGCACGCCGGCCTAACCAG CCGACGGAGGAATTCAGGAATGTGGTGTTTGGGGGGCAGCTCACGGAGGGGEST: gi|211018199|gb|FL215889.1|FL215889
genomic: GGCCTCACCCCGATGGCGCCGGGTCGCTGCCAGCACGCCGGCCTAACCAGgtgacccgct ... cgccctgcagCCGACGGAGGAATTCAGGAATGTGGTGTTTGGGGGGCAGCTCACGGAGGGG
EST: GGCCTCACCCCGATGGCGCCGGGTCGCTGCCAGCACGCCGGCCTAACCAG CCGACGGAGGAATTCAGGAATGTGGTGTTTGGGGGGCAGCTCACGGAGGGGEST: gi|22819528|gb|BU499618.1|BU499618
genomic: GGCCTCACCCCGATGGCGCCGGGTCGCTGCCAGCACGCCGGCCTAACCAGgtgacccgct ... cgccctgcagCCGACGGAGGAATTCAGGAATGTGGTGTTTGGGGGGCAGCTCACGGAGGGG
EST: GGCCTCACCCCGATGGCGCCGGGTCGCTGCCAGCACGCCGGCCTAACCAG CCGACGGAGGAATTCAGGAATGTGGTGTTTGGGGGGCAGCTCACGGAGGGGEST: gi|76936903|gb|DV174954.1|DV174954
genomic: GGCCTCACCCCGATGGCGCCGGGTCGCTGCCAGCACGCCGGCCTAACCAGgtgacccgct ... cgccctgcagCCGACGGAGGAATTCAGGAATGTGGTGTTTGGGGGGCAGCTCACGGAGGGG
EST: GGCCTCACCCCGATGGCGCCGGGTCGCTGCCAGCACGCCGGCCTAACCAG CCGACGGAGGAATTCAGGAATGTGGTGTTTGGGGGGCAGCTCACGGAGGGGEST: gi|71327882|gb|DR800570.1|DR800570
genomic: GGCCTCACCCCGATGGCGCCGGGTCGCTGCCAGCACGCCGGCCTAACCAGgtgacccgct ... cgccctgcagCCGACGGAGGAATTCAGGAATGTGGTGTTTGGGGGGCAGCTCACGGAGGGG
EST: GGCCTCACCCCGATGGCGCCGGGTCGCTGCCAGCACGCCGGCCTAACCAG CCGACGGAGGAATTCAGGAATGTGGTGTTTGGGGGGCAGCTCACGGAGGGGEST: gi|211018201|gb|FL215891.1|FL215891
genomic: GGCCTCACCCCGATGGCGCCGGGTCGCTGCCAGCACGCCGGCCTAACCAGgtgacccgct ... cgccctgcagCCGACGGAGGAATTCAGGAATGTGGTGTTTGGGGGGCAGCTCACGGAGGGG
EST: GGCCTCACCCCGATGGCGCCGGGTCGCTGCCAGCACGCCGGCCTAACCAG CCGACGGAGGAATTCAGGAATGTGGTGTTTGGGGGGCAGCTCACGGAGGGG
genomic: GGCCTCACCCCGATGGCGCCGGGTCGCTGCCAGCACGCCGGCCTAACCAGgtgacccgct ... cgccctgcagCCGACGGAGGAATTCAGGAATGTGGTGTTTGGGGGGCAGCTCACGGAGGGG
ggcgcgctgcttgtgatcgtcgttgatctcttgtggtccctctctcgccctgcagCCGACGGAGGAATTCAGGAATGTGGTGTTTGGGGGGCAGCTCACGGAGGGGGCCGACGGCCTCAACAAGACGAAGAG
cgttgat putative branch site (score: 80)
tccctctctcgccctg putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgacccgctcttctgttcctccgccacccgccccgcgcggcgcgctgcttgtgatcgtcgttgatctcttgtggtccctctctcgccctgcagCCGACGGAGGAATTCAGGAATGTGGTGTTTGGGGGGCAGCTCACGGAGGGGGCCGACGGCCTCAACAAGACGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA