1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaaaatcctcctgctccccagtccttcgcatgtctgaagcccccaacctcattcctactccatctcctccccctcctttgcccgtcccccttcttcgcactcacttttttctctgctctttccagCTCCCCTGTCCGGGTCGGCGCCCAAGAGGCTCAGGGCGATGGCCACAGACGCCGCTGCAGTGCCGAATCCCCCAGCCTCTAGTGGCTGCCCCGCGATGAA
species | Zea mays |
transcript | GRMZM2G128080_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCACCTGCGCTTCGCCTCCTTCCTCTCAATGGCGGCGCCCCAGCAATCCG CTCCCCTGTCCGGGTCGGCGCCCAAGAGGCTCAGGGCGATGGCCACAGACGEST: gi|211191936|gb|FL162062.1|FL162062
genomic: CCACCTGCGCTTCGCCTCCTTCCTCTCAATGGCGGCGCCCCAGCAATCCGgtaaaatcct ... ctctttccagCTCCCCTGTCCGGGTCGGCGCCCAAGAGGCTCAGGGCGATGGCCACAGACG
EST: CCACCTGCGCTTCGCCTCCTTCCTCTCAATGGCGGCGCCCCAGCAATCCG CTCCCCTGTCCGGGTCGGCGCCCAAGAGGCTCAGGGCGATGGCCACAGACGEST: gi|211191938|gb|FL162064.1|FL162064
genomic: CCACCTGCGCTTCGCCTCCTTCCTCTCAATGGCGGCGCCCCAGCAATCCGgtaaaatcct ... ctctttccagCTCCCCTGTCCGGGTCGGCGCCCAAGAGGCTCAGGGCGATGGCCACAGACG
EST: CCACCTGCGCTTCGCCTCCTTCCTCTCAATGGCGGCGCCCCAGCAATCCG CTCCCCTGTCCGGGTCGGCGCCCAAGAGGCTCAGGGCGATGGCCACAGACGEST: gi|211191935|gb|FL162061.1|FL162061
genomic: CCACCTGCGCTTCGCCTCCTTCCTCTCAATGGCGGCGCCCCAGCAATCCGgtaaaatcct ... ctctttccagCTCCCCTGTCCGGGTCGGCGCCCAAGAGGCTCAGGGCGATGGCCACAGACG
EST: CCACCTGCGCTTCGCCTCCTTCCTCTCAATGGCGGCGCCCCAGCAATCCG CTCCCCTGTCCGGGTCGGCGCCCAAGAGGCTCAGGGCGATGGCCACAGACG
genomic: CCACCTGCGCTTCGCCTCCTTCCTCTCAATGGCGGCGCCCCAGCAATCCGgtaaaatcct ... ctctttccagCTCCCCTGTCCGGGTCGGCGCCCAAGAGGCTCAGGGCGATGGCCACAGACG
ccctcctttgcccgtcccccttcttcgcactcacttttttctctgctctttccagCTCCCCTGTCCGGGTCGGCGCCCAAGAGGCTCAGGGCGATGGCCACAGACGCCGCTGCAGTGCCGAATCCCCCAGCCTCTAGTGGCTGCCCCGCGATGAA
cactcac putative branch site (score: 39)
tcccccttcttcgcac CT-rich tract
actttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaatcctcctgctccccagtccttcgcatgtctgaagcccccaacctcattcctactccatctcctccccctcctttgcccgtcccccttcttcgcactcacttttttctctgctctttccagCTCCCCTGTCCGGGTCGGCGCCCAAGAGGCTCAGGGCGATGGCCACAGACGCCGCTGCAGTGCCGAATCCCCCAGCCTCTAGTGGCTGCCCCGCGATGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG