1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...taataaattgatgtatgtttctgcaattttgcttatacatgcctattttcattatggagttacttacttatctgtaattttgtttgtccgccctgtgcagATGATGGAGCCCACGAGCCATTTTCACGTAAACTTCTTGAAGATAAGCCTCGGATCAC
species | Zea mays |
transcript | GRMZM2G127941_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCCGACCATGGCGAGGCCATCAAGGAGGACACCGGCCACGATCCGTCAG ATGATGGAGCCCACGAGCCATTTTCACGTAAACTTCTTGAAGATAAGCCTCEST: gi|71437738|gb|DR818788.1|DR818788
genomic: AGCCGACCATGGCGAGGCCATCAAGGAGGACACCGGCCACGATCCGTCAGgtttctctcc ... ccctgtgcagATGATGGAGCCCACGAGCCATTTTCACGTAAACTTCTTGAAGATAAGCCTC
EST: AGCCGACCATGGCGAGGCCATCAAGGAGGACACCGGCCACGATCCGTCAG ATGATGGAGCCCACGAGCCATTTTCACGTAAACTTCTTGAAGATAAGCCTCEST: gi|71440566|gb|DR821616.1|DR821616
genomic: AGCCGACCATGGCGAGGCCATCAAGGAGGACACCGGCCACGATCCGTCAGgtttctctcc ... ccctgtgcagATGATGGAGCCCACGAGCCATTTTCACGTAAACTTCTTGAAGATAAGCCTC
EST: AGCCGACCATGGCGAGGCCATCAAGGAGGACACCGGCCACGATCCGTCAG ATGATGGAGCCCACGAGCCATTTTCACGTAAACTTCTTGAAGATAAGCCTC
genomic: AGCCGACCATGGCGAGGCCATCAAGGAGGACACCGGCCACGATCCGTCAGgtttctctcc ... ccctgtgcagATGATGGAGCCCACGAGCCATTTTCACGTAAACTTCTTGAAGATAAGCCTC
ttttcattatggagttacttacttatctgtaattttgtttgtccgccctgtgcagATGATGGAGCCCACGAGCCATTTTCACGTAAACTTCTTGAAGATAAGCCTCGGATCAC
tacttac putative branch site (score: 12)
tccgccct putative PPT
ttatctgtaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taataaattgatgtatgtttctgcaattttgcttatacatgcctattttcattatggagttacttacttatctgtaattttgtttgtccgccctgtgcagATGATGGAGCCCACGAGCCATTTTCACGTAAACTTCTTGAAGATAAGCCTCGGATCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - tgatgta
- - - - - - - -tgtttct
- - - - - - - - - - - - - ttttgct
- - - - - - - - - - - - - - - - - atacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgt