1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...acgatacaattttagttactatccaccaaccgaatccaaattggactgttcttataggatattagcattatcttactgaatttctgctgcggattagcagGTCCATTATAACTTTTTATGACCTTGTCTGGGATGGCTGTTGCTTTCAAAGCAAGTACAAGTTCTGTCACACAGCAACATTGGTCAAGTCCAACAAAGGA
species | Zea mays |
transcript | GRMZM2G127717_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCGCTCCAAGCTGAATCCCCCCATCTCCTATCGCCGTCGAAAGCCGCAG GTCCATTATAACTTTTTATGACCTTGTCTGGGATGGCTGTTGCTTTCAAAGEST: gi|76291543|gb|DV031111.1|DV031111
genomic: CGCGCTCCAAGCTGAATCCCCCCATCTCCTATCGCCGTCGAAAGCCGCAGgtaggctgcc ... ggattagcagGTCCATTATAACTTTTTATGACCTTGTCTGGGATGGCTGTTGCTTTCAAAG
EST: CGCGCTCCAAGCTGAATCCCCCCATCTCCTATCGCCGTCGAAAGCCGCAGCAGEST: gi|50331617|gb|CO526743.1|CO526743
genomic: CGCGCTCCAAGCTGAATCCCCCCATCTCCTATCGCCGTCGAAAG-C-C-GCAGgtaggctgcc ... ggattagc
EST: CGCGCTCCAAGCTGAATCCCCCCATCTCCTATCGCCGTCGAAAGCCGCAG GTCCATTATAACTTTTTATGACCTTGTCTGGGATGGCTGTTGCTTTCAAAGEST: gi|50339175|gb|CO534301.1|CO534301
genomic: CGCGCTCCAAGCTGAATCCCCCCATCTCCTATCGCCGTCGAAAGCCGCAGgtaggctgcc ... ggattagcagGTCCATTATAACTTTTTATGACCTTGTCTGGGATGGCTGTTGCTTTCAAAG
EST: CGCGCTCCAAGCTGAATCCCCCCATCTCCTATCGCCGTCGAAAGCCGCAG GTCCATTATAACTTTTTATGACCTTGTCTGGGATGGCTGTTGCTTTCAAAGEST: gi|76283551|gb|DV023119.1|DV023119
genomic: CGCGCTCCAAGCTGAATCCCCCCATCTCCTATCGCCGTCGAAAGCCGCAGgtaggctgcc ... ggattagcagGTCCATTATAACTTTTTATGACCTTGTCTGGGATGGCTGTTGCTTTCAAAG
EST: CGCGCTCCAAGCTGAATCCCCCCATCTCCTATCGCCGTCGAAAGCCGCAG GTCCATTATAACTTTTTATGACCTTGTCTGGGATGGCTGTTGCTTTCAAAG
genomic: CGCGCTCCAAGCTGAATCCCCCCATCTCCTATCGCCGTCGAAAGCCGCAGgtaggctgcc ... ggattagcagGTCCATTATAACTTTTTATGACCTTGTCTGGGATGGCTGTTGCTTTCAAAG
ctgttcttataggatattagcattatcttactgaatttctgctgcggattagcagGTCCATTATAACTTTTTATGACCTTGTCTGGGATGGCTGTTGCTTTCAAAGCAAGTACAAGTTCTGTCACACAGCAACATTGGTCAAGTCCAACAAAGGA
atcttac putative branch site (score: 93)
attatctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acgatacaattttagttactatccaccaaccgaatccaaattggactgttcttataggatattagcattatcttactgaatttctgctgcggattagcagGTCCATTATAACTTTTTATGACCTTGTCTGGGATGGCTGTTGCTTTCAAAGCAAGTACAAGTTCTGTCACACAGCAACATTGGTCAAGTCCAACAAAGGA
- - - - - - - - - - - -caccaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actgaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgctg