Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgtgcgagagatttttctcctctctcggttccaaagttttatttggctgaacaagtgttggttttccacccttcgttcttgcagctcgcagtgttaatttgtgttccttgtgctctatatgattttgctcttcataatttggtcgatgaacctgcatgcgtcgtcgtgcatgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGATCACGTACGTGTTCGGGGAGATGCATTTCCCGCTGTCGCAGGCGGCGAA

Basic information

species Zea mays
transcript GRMZM2G127134_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G127134_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os11g12740.1 (Oryza sativa), 3'ss of exon 1
gttcgtgcgagagatttttctcctctctcggttccaaagttttatttggctgaacaagtgttggttttccacccttcgttcttgcagctcgcagtgttaatttgtgttccttgtgctctatatgattttgctcttcataatttggtcgatgaacctgcatgcgtcgtcgtgcatgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGATCACGTACGTGTTCGGGGAGATGCATTTCCCGCTGTCGCAGGCGGCGAA
                                        ||  |||   |    |  |  |  | ||   || ||  ||||||          ||||  ||  | |   |||| ||     || || ||   ||  |  |||| | |||      |  ||| | |  |   ||| |  ||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||| ||||| |||   |||||||| | |||||||||  || |||| ||
---------------------------------------gttcgtttaattagttagttactc-tcttaatccattatttcttgggtagaaatatgttgcttgatctgatttgttct-----tgtttgtg---tttgtgttttgttggata---tcgtttgcattgatg---atgattgcagGGATCCAGGCGTTCGAGATGATGGCGATCGCGGCGGTGGGGAACAACCTGATCACCTACGTCTTCAACGAGATGCACTACCCGCTGTCAAAGTCGGCCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50335697|gb|CO530823.1|CO530823
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|50332764|gb|CO527890.1|CO527890
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|71306930|gb|DR789618.1|DR789618
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|94476942|gb|EB705900.1|EB705900
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|78079777|gb|DV508189.1|DV508189
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|211060829|gb|FL422589.1|FL422589
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|76017380|gb|DT944550.1|DT944550
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|33466949|gb|CF243998.1|CF243998
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|78088571|gb|DV516964.1|DV516964
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|101396802|gb|EB820327.1|EB820327
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|93013948|gb|EB639468.1|EB639468
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCCTG
genomic: -TGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACC-TG
EST: gi|76292338|gb|DV031906.1|DV031906
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|78088277|gb|DV516670.1|DV516670
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|149061236|gb|EE157501.2|EE157501
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|74241009|gb|DT648923.1|DT648923
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|101385636|gb|EB814866.1|EB814866
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|71767934|gb|DR965871.1|DR965871
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|38687834|gb|CK144865.1|CK144865
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|93283474|gb|EB675738.1|EB675738
EST:     GCGACCCCCTCAAGCACGGGCGGCATGAAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCCGCGGTGGGGAACAACCTGA
genomic: GCGACCCCCTCAAGCACGG-CGGCATGAAA-GCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|148930309|gb|EE284701.2|EE284701
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|74236266|gb|DT644180.1|DT644180
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|149112900|gb|EE295698.2|EE295698
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|93016178|gb|EB641698.1|EB641698
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|94476399|gb|EB705357.1|EB705357
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGGTTGCGGCGGTGGGGAACAACCTG
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGG-TTGCGGCGGTGGGGAACAACCTG
EST: gi|211168134|gb|FL415659.1|FL415659
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|74237025|gb|DT644939.1|DT644939
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|50333318|gb|CO528444.1|CO528444
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|76290056|gb|DV029624.1|DV029624
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGGTTGCCAG                  
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCC-----T---AGgttcgtgcga ... atg
EST: gi|50322537|gb|CO517663.1|CO517663
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|78110837|gb|DV529235.1|DV529235
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|91056735|gb|EB167153.1|EB167153
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|148972660|gb|EE023621.2|EE023621
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|148963669|gb|EE014730.2|EE014730
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|148935735|gb|EC879778.2|EC879778
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|149079412|gb|EE168389.2|EE168389
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|78113841|gb|DV532230.1|DV532230
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|71306901|gb|DR789605.1|DR789605
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|78111865|gb|DV530262.1|DV530262
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|76010434|gb|DT937604.1|DT937604
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|89764011|gb|DY690972.1|DY690972
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|71770013|gb|DR967950.1|DR967950
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|110519115|gb|EE023702.1|EE023702
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCCAAATGATGGTGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|148947537|gb|EC893008.2|EC893008
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|71422731|gb|DR805807.1|DR805807
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|74234781|gb|DT642695.1|DT642695
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|71765080|gb|DR963017.1|DR963017
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|93013965|gb|EB639485.1|EB639485
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|71772995|gb|DR970916.1|DR970916
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|149112067|gb|EE295008.2|EE295008
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|89762598|gb|DY690114.1|DY690114
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|88757222|gb|DY541363.1|DY541363
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
EST: gi|71757757|gb|DR955694.1|DR955694
EST:     CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAG                         GGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA
genomic: CTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 44 (downstream exon)
Score: 51

AAAGGGGACGCCATAGCTGCTGCTGTCTCTGTTGACTGGAAGGGAAGGCCCTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGATCACGTACGTGTTCGGGGAGATGCATTTCCCGCTGTCGCAGGCGGCGAA


Block sizes: 42 (upstream exon), 40 (downstream exon)
Score: 67

AAAGGGGACGCCATAGCTGCTGCTGTCTCTGTTGACTGGAAGGGAAGGCCCTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGATCACGTACGTGTTCGGGGAGATGCATTTCCCGCTGTCGCAGGCGGCGAA


Block sizes: 49 (upstream exon), 45 (downstream exon)
Score: 231

AAAGGGGACGCCATAGCTGCTGCTGTCTCTGTTGACTGGAAGGGAAGGCCCTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGATCACGTACGTGTTCGGGGAGATGCATTTCCCGCTGTCGCAGGCGGCGAA


Block sizes: 40 (upstream exon), 47 (downstream exon)
Score: 14

AAAGGGGACGCCATAGCTGCTGCTGTCTCTGTTGACTGGAAGGGAAGGCCCTGCGACCCCCTCAAGCACGGCGGCATGAAAGCCGCGGTCTTCGTCCTAGgttcgtgcga ... atgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGATCACGTACGTGTTCGGGGAGATGCATTTCCCGCTGTCGCAGGCGGCGAA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgctcttcataatttggtcgatgaacctgcatgcgtcgtcgtgcatgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGATCACGTACGTGTTCGGGGAGATGCATTTCCCGCTGTCGCAGGCGGCGAA
      ttcataattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttcgtgcgagagatttttctcctctctcggttccaaagttttatttggctgaacaagtgttggttttccacccttcgttcttgcagctcgcagtgttaatttgtgttccttgtgctctatatgattttgctcttcataatttggtcgatgaacctgcatgcgtcgtcgtgcatgttgccagGGATCCAGGCGTTCGAAATGATGGCGGTTGCGGCGGTGGGGAACAACCTGATCACGTACGTGTTCGGGGAGATGCATTTCCCGCTGTCGCAGGCGGCGAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG