Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcttctctcgcttcgtctctcggacttcggtgattagaatttgatccatgggtttgattcgctgcctgctctcgcacgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCCACCAACGAGGTCCGCG

Basic information

species Zea mays
transcript GRMZM2G126928_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126928_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g47660.1 (Oryza sativa), 3'ss of exon 1
gtgagtcttctctcgcttcgtctctcggacttcggtgattagaatttgatccatgggtttgattcg-ctgcctgctctcgcacgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCCACCAACGAGGTCCGCG
                |  |   |     ||||||||  |         ||| || ||||||||   ||| |  ||| ||   | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
---------------gtaagcagccgttgcttcggtggatgtggccgcctccgtgcgtttgattgatctgtcctctc-cgtgtgcgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACCCCCGGCGATGAGCACCCCAAGATCTACCGGATGAAGCTCTGGGCCACCAATGAGGTCCGCG

upper sequence: GRMZM2G126928_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S74_193V6.2 (Physcomitrella patens), 3'ss of exon 1
-----gtgagtcttctctcgcttcgtctctcggac-----ttcggtgattagaatttg--atccatgggtttgattcgctgcctgctctcgcacgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCCACCAACGAGGTCCGCG
      ||| | ||   |  |  |||     |  |     | |||| | | |  ||    ||     ||||    ||||| ||   |       || | ||||| ||||| ||||||||||| ||||| || || || ||  |   | |||||   || |||   ||||||||||||||||||||||||||||| || ||||
tgtgtatgattgtttgatgtcaccgtagtatgacccatcatgcggtaacttgttttcatcattttccggttctgatcgct-ccaatttcttttggtat-cagTTTCATCAATACCAGGTGGTTGGGCGGGCCCTTCCTACCGCGACCAATGAGACACCTAAGGCTTACCGCATGAAGCTCTGGGCCACCAACGAAGTGCGCG

upper sequence: GRMZM2G126928_T01 (Zea mays), 3'ss of exon 1
lower sequence: EFJ38689 (Selaginella moellendorffii), 3'ss of exon 1
gtgagtcttctctcgcttcgtctctcggacttcggtgatt-agaatttgatccatgggtttgattcgctgcctgctctcgcacgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCCACCAACGAGGTCCGCG
                        |  || ||||  | |  ||   | ||||||| | || ||| |    | |  |||||||        ||| ||||||||||||||||| ||| | ||    || || |||| | |||||||||| ||||| ||||| |||||||||||||||  | |||| || ||||
-----------------------gtaagaattcgcagctcgagcgctcgatccatcgatt-gatccctcccattgtctcgca--------gTTTCATCAGTACCAGGTGGTCGGGAGAGCTACTCCCACTCCCGACAATGAGCACCCAAAGATGTACCGGATGAAGCTCTGGGCCGGCGACGAAGTGCGCG

upper sequence: GRMZM2G126928_T01 (Zea mays), 3'ss of exon 1
lower sequence: EFJ31458 (Selaginella moellendorffii), 3'ss of exon 1
gtgagtcttctctcgcttcgtctctcggacttcggtgatt-agaatttgatccatgggtttgattcgctgcctgctctcgcacgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCCACCAACGAGGTCCGCG
                        |  || ||||  | |  ||   | ||||||| | || ||| |    | |  |||||||        ||| || |||||||||||||| ||  | ||    || || |||| | |||||||||| ||||| ||||| |||||||||||||||  | |||| || ||||
-----------------------gtaagaattcgcagctcgagcgctcgatccatcgatt-gatccctcccattgtctcgca--------gTTTCACCAGTACCAGGTGGTCGGAAGAGCTACTCCCACTCCCGACAATGAGCACCCAAAGATGTACCGGATGAAGCTCTGGGCCGGCGACGAAGTGCGCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16920669|gb|BM074770.1|BM074770
EST:     CTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
genomic: CTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|211102330|gb|FL044843.1|FL044843
EST:     TGTAGGTTAGGCTA-GGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|32914647|gb|CF019459.1|CF019459
EST:     TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTCCCGACGCCCGGCGATGAG
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|37422722|gb|CF649076.1|CF649076
EST:     TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|28909868|gb|CB331139.1|CB331139
EST:     TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|9794666|gb|BE552974.1|BE552974
EST:     GCTA-GGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
genomic: GCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|211102334|gb|FL044847.1|FL044847
EST:     TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|67014317|gb|CO443066.1|CO443066
EST:     TTTAAGTTAGGCTAGGGTTCGACCAGCTAGCGG-AATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|32912957|gb|CF017769.1|CF017769
EST:     TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTCCCGACGCCCGGCGATGAG
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|20301158|gb|BQ164101.1|BQ164101
EST:     AGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTTGTGGGGCGCGCGCTCCCGACGCCCGGCGATGAG
genomic: AGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|32868158|gb|CF007840.1|CF007840
EST:     TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTCCCGACGCCCGGCGATGAG
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|32862998|gb|CF002680.1|CF002680
EST:     TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTCCCGACGCCCGGCGATGAG
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|211099856|gb|FL044834.1|FL044834
EST:     TGTAGGTTAGGCTA-GGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|32862779|gb|CF002461.1|CF002461
EST:     TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTCCCGACGCCCGGCGATGAG
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|211099848|gb|FL044826.1|FL044826
EST:     TGTAGGTTAGGCTA-GGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|211099845|gb|FL044823.1|FL044823
EST:     TCTAGGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGSGGGCGCGCGCTGCCGACGCCCGGCGATGA
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTG-GGGCGCGCGCTGCCGACGCCCGGCGATGA
EST: gi|32851296|gb|CD990977.1|CD990977
EST:     TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTCCCGACGCCCGGCGATGAG
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|211099846|gb|FL044824.1|FL044824
EST:     TGTAGGTTAGGCTA-GGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|211102326|gb|FL044839.1|FL044839
EST:     TGTAGGTTAGGCTA-GGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|74238642|gb|DT646556.1|DT646556
EST:     GGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
genomic: GGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|71310861|gb|DR791735.1|DR791735
EST:     AGGGTTCGACCAGCTAGCGGAAATGGT-GCCTTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGA
genomic: AGGGTTCGACCAGCTAGCGGAAATGGTGGCC-TTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGA
EST: gi|84980828|gb|DW531177.1|DW531177
EST:     TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|40334660|gb|CK368730.1|CK368730
EST:     TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|78021903|gb|DV490290.1|DV490290
EST:     GGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
genomic: GGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|211266386|gb|FL049660.1|FL049660
EST:     AAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTCCCGACGCCCGGCGATGAG
genomic: AAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|211102323|gb|FL044836.1|FL044836
EST:     TGTAGGTTAGGCTA-GGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         T
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcag-
EST: gi|211102323|gb|FL044836.1|FL044836
EST:     TGTAGGTTAGGCTA-GGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         T
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcag-
EST: gi|32912986|gb|CF017798.1|CF017798
EST:     TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGCGGGGCGCGCGCTCCCGACGCCCGGCGATGAG
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|211097378|gb|FL044820.1|FL044820
EST:     TGTAGGTTAGGCTA-GGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|44900234|gb|CK826779.1|CK826779
EST:     CGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
genomic: CGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|211102329|gb|FL044842.1|FL044842
EST:     TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGAGGCGCGCGCTGCCGACGCCCGGCGATGAG
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|149111389|gb|EE294892.2|EE294892
EST:     GTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
genomic: GTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|211099849|gb|FL044827.1|FL044827
EST:     TCTAGGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|211263958|gb|FL049655.1|FL049655
EST:     GTTAGGCTA-GGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
genomic: GTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|211099844|gb|FL044822.1|FL044822
EST:     TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTCCCGACGCCCGGCGATGAG
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|50323515|gb|CO518641.1|CO518641
EST:     TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|32911376|gb|CF016188.1|CF016188
EST:     TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTCCCGACGCCCGGCGATGAG
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|67011157|gb|CO439906.1|CO439906
EST:     CTAAGTTATGCTAGGGTTCGACCAGCTAGCGG-AATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
genomic: CTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|32913608|gb|CF018420.1|CF018420
EST:     TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTCCCGACGCCCGGCGATGAG
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|211102327|gb|FL044840.1|FL044840
EST:     TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATKGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGAGGCGCGCGCTGCCGACGCCCGGCGATGAG
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|32851416|gb|CD991097.1|CD991097
EST:     TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTCCCGACGCCCGGCGATGAG
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|60351011|gb|DN217984.1|DN217984
EST:     AATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
genomic: AATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|20301127|gb|BQ164070.1|BQ164070
EST:     CCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTCCCGACGCCCGGCGATGAG
genomic: CCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|91047926|gb|EB158344.1|EB158344
EST:     TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|9954070|gb|BE640653.1|BE640653
EST:     TAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGG-GGGGCGCGCGCTGCCGACGCCCGGCGATGAG
genomic: TAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|15632329|gb|BI679422.1|BI679422
EST:     GAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
genomic: GAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|33094407|gb|CF054401.1|CF054401
EST:     TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTCCCGACGCCCGGCGATGAG
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|84979961|gb|DW530310.1|DW530310
EST:     TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|116826664|gb|EC870471.1|EC870471
EST:     TCTAAATTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGG-CTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|32907762|gb|CF012575.1|CF012575
EST:     TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTCCCGACGCCCGGCGATGAG
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|32913609|gb|CF018421.1|CF018421
EST:     TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTCCCGACGCCCGGCGATGAG
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|18168944|gb|BM338784.1|BM338784
EST:     CTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
genomic: CTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|32859520|gb|CD999201.1|CD999201
EST:     TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTCCCGACGCCCGGCGATGAG
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|9254698|gb|BE345166.1|BE345166
EST:     GGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
genomic: GGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|211263950|gb|FL049647.1|FL049647
EST:     TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTCCCGACGCCCGGCGATGAG
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|32907763|gb|CF012576.1|CF012576
EST:     TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTCCCGACGCCCGGCGATGAG
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|32919773|gb|CF024585.1|CF024585
EST:     TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTCCCGACGCCCGGCGATGAG
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|60351010|gb|DN217983.1|DN217983
EST:     GTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
genomic: GTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|211099853|gb|FL044831.1|FL044831
EST:     TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|76294102|gb|DV033670.1|DV033670
EST:     CTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
genomic: CTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|211099857|gb|FL044835.1|FL044835
EST:     TCTAGGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|71310863|gb|DR791736.1|DR791736
EST:     GTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
genomic: GTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|211099850|gb|FL044828.1|FL044828
EST:     TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTCCCGACGCCCGGCGATGAG
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|211099847|gb|FL044825.1|FL044825
EST:     TCTAGGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
EST: gi|84980956|gb|DW531305.1|DW531305
EST:     TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGG                         TTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG
genomic: TCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 639

CTATAAACACTTCTCTCACGCCCCGCCGCCGCCTCCGCTCGCCACCGTCGTCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCCACCAACGAGGTCCGCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 693

CTATAAACACTTCTCTCACGCCCCGCCGCCGCCTCCGCTCGCCACCGTCGTCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCCACCAACGAGGTCCGCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 629

CTATAAACACTTCTCTCACGCCCCGCCGCCGCCTCCGCTCGCCACCGTCGTCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCCACCAACGAGGTCCGCG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 536

CTATAAACACTTCTCTCACGCCCCGCCGCCGCCTCCGCTCGCCACCGTCGTCTAAGTTAGGCTAGGGTTCGACCAGCTAGCGGAAATGGTGGCCTTCAGGgtgagtcttc ... acgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCCACCAACGAGGTCCGCG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgattagaatttgatccatgggtttgattcgctgcctgctctcgcacgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCCACCAACGAGGTCCGCG
                     gtttgat  putative branch site (score: 536)
       aatttgat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtcttctctcgcttcgtctctcggacttcggtgattagaatttgatccatgggtttgattcgctgcctgctctcgcacgtgtgcagTTCCATCAGTACCAGGTGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCCACCAACGAGGTCCGCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC