Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcttttttgtgttttctttcttcgctcgtgttcttctccctcccctgtttgcctattgggaagtttcgtttcatggcgatgaatggtcgtcatggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGGTGCTCGACGCCGGCTTCGTCGTGCCGGACGCCAACGCCTTCGGCAATAC

Basic information

species Zea mays
transcript GRMZM2G126900_T04
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126900_T04 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os06g36560.1 (Oryza sativa), 3'ss of exon 1
gtgagcttttttgtgttttctttcttcgctcgtgttcttctccctcccctgtttgcctattgggaagtttcgt----ttcatggc--gatgaatgg-tcgt---------------------------catggc------gcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTG---------ACCCCGCGGAGCTGGTGCTCGACGCCGGCTTCGTCGTGCCGGACGCCAACGCCTTCGGCAATAC
|||||||  |     |||||| |||   ||| || | |  |   |||  |   ||   |     | |||  |     ||| |||   |||| |||| ||||                           |||||       ||||||||  | || ||  |||| ||| ||||||| || |         || | |||||||| |||||||||| ||||||||||||||||||| ||||||||||         
gtgagctcatgatccttttctctctct-ctcttgatttcttgattccagtccgtgaggaagaaaaggttcagcaatgttcctggatggatggatggatcgtggaactaattaaggttctaagttctgacatggttcgcttgcagATGCTATCGCCGACCGGAAGGTCGCCGGCGGCGGCGGCGGCGACAACGCGGCGGAGCTCGTGCTCGACGGCGGCTTCGTCGTGCCGGACTCCAACGCCTT---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211530471|gb|FL294711.1|FL294711
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|45847627|gb|CN071570.1|CN071570
EST:     GCGGCGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|32919577|gb|CF024389.1|CF024389
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|211530470|gb|FL294710.1|FL294710
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGAAGAGGAAAGTCCCCGGCGGAGGCGACCCCGCGGAS-TGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|84351326|gb|DW245731.1|DW245731
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|32862853|gb|CF002535.1|CF002535
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|14529280|gb|BI096413.1|BI096413
EST:     TCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: TCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|15353074|gb|BI502685.1|BI502685
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|15427110|gb|BI542932.1|BI542932
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|15079947|gb|BI388888.1|BI388888
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGACCAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|60341529|gb|DN208502.1|DN208502
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|211530473|gb|FL294713.1|FL294713
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGCGACCCCGCGGASSTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|211533471|gb|FL294719.1|FL294719
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGCGACCCCGCGGA-CTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|148958996|gb|EE010519.2|EE010519
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|14569307|gb|BI097630.1|BI097630
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|211414693|gb|FL109921.1|FL109921
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTMCCCGGCGGAGGCGACCCCGCGGA-CTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG