Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccttgcactgagctgtgtggccttaatgtccttgggaaaaaataaaaaatgagaacgcaggagctgatgaacgaccgggaactcctgacccttggtgcagGGACTACGACGCGGAGTCGGAGCGGAAGCAGACGGTAGAGGAGTTCTACCGGGTGAACCACGTGAGGCAGACGCACGAGTTCGTGGCGCGGATGCGGGCG

Basic information

species Zea mays
transcript GRMZM2G126900_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126900_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os06g36560.1 (Oryza sativa), 3'ss of exon 2
----ccttgcactgagctgtgtggccttaatgtccttgggaaaaaataaaaaatgagaacgcaggagctgatgaacgaccgggaactcctgacccttggtgcagGGACTACGACGCGGAGTCGGAGCGGAAGCAGACGGTAGAGGAGTTCTACCGGGTGAACCACGTGAGGCAGACGCACGAGTTCGTGGCGCGGATGCGGGCG
    |     | |||  | | |  |     ||    |   | | | |    ||  | || | |  | | |    |  |  | ||  |  | |  ||     |||| | || || || ||||| ||| ||||| ||||||| ||||||||||||||||| |||||| | |  |||||  | || |||                  
taatctagaaattgaaatctttttcaacggtggtagtaaaagatatttcttaaaaaaaaggaattaaccggaataatatggtgatgttttaaatctc----cagGAATTATGAGGCCGAGTCTGAGAGGAAGGAGACGGTGGAGGAGTTCTACCGGGTCAACCACATCAACCAGACATATGATTTC------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19057958|gb|BM736625.1|BM736625
EST:     GACGCCGGCTTCGTCGTGCCGGACGCCAACGCCTTCGGCAATACCTTCAG                         GGACTACGACGCGGAGTCGGAGCGGAAGCAGACGGTAGAGGAGTTCTACCG
genomic: GACGCCGGCTTCGTCGTGCCGGACGCCAACGCCTTCGGCAATACCTTCAGgtgaaacagc ... cttggtgcagGGACTACGACGCGGAGTCGGAGCGGAAGCAGACGGTAGAGGAGTTCTACCG
EST: gi|154130490|gb|EC872226.2|EC872226
EST:     GACGCCGGCTTCGTCGTGCCGGACGCCAACGCCTTCGGCAATACCTTCAG                         GGACTACGACGCGGAGTCGGAGCGGAAGCAGACGGTAGAGGAGTTCTACCG
genomic: GACGCCGGCTTCGTCGTGCCGGACGCCAACGCCTTCGGCAATACCTTCAGgtgaaacagc ... cttggtgcagGGACTACGACGCGGAGTCGGAGCGGAAGCAGACGGTAGAGGAGTTCTACCG
EST: gi|76923453|gb|DV169495.1|DV169495
EST:     GACGCCGGCTTCGTCGTGCCGGACGCCAACGCCTTCGGCAATACCTTCAG                         GGACTACGACGCGGAGTCGGAGCGGAAGCAGACGGTAGAGGAGTTCTACCG
genomic: GACGCCGGCTTCGTCGTGCCGGACGCCAACGCCTTCGGCAATACCTTCAGgtgaaacagc ... cttggtgcagGGACTACGACGCGGAGTCGGAGCGGAAGCAGACGGTAGAGGAGTTCTACCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaatgagaacgcaggagctgatgaacgaccgggaactcctgacccttggtgcagGGACTACGACGCGGAGTCGGAGCGGAAGCAGACGGTAGAGGAGTTCTACCGGGTGAACCACGTGAGGCAGACGCACGAGTTCGTGGCGCGGATGCGGGCG
                                     tcctgac  putative branch site (score: 2)
                                           ccctt  CT-rich tract