1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cttgattcaaatctagaatttattgacctggtaaaaatttattttcaattttgaatggtttgtttgccagtatgaactaatgaagaatgctatcccttagGCAAGCGGAGGCCTTGGAGGGCGTTTCTTTTATATGGCCCTCCTGGAACAGGAAAGTCTTACTTGGCAAAAGCCGTCGCAACCGAGGCTGATTCAACATT
species | Zea mays |
transcript | GRMZM2G126860_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTGCAGGAGGCCGTCATATTGCCGGTCAAGTTCCCACAGTTCTTCACGG GCAAGCGGAAGCTTTGGAAGGCGTTTCTTTTGTATGGCCTTCCTGGAAACAEST: gi|18654969|gb|BM499774.1|BM499774
genomic: TCTGCAGGAGGCCGTCATATTGCCGGTCAAGTTCCCACAGTTCTTCACGGgtgagctacg ... tatcccttagGCAAGCGGAGGCCTTGGAGGGCGTTTCTTTTATATGGCCCTCCTGGAA-CA
EST: TCTGCAGGAGGCCGTCATATTGCCGGTCAAGTTCCCACAGTTCTTCACGG GCAAGCGGAGGCCTTGGAGGGCGTTTCTTTTGTATGGCCCTCCTGGAACAGEST: gi|149106969|gb|EE188868.2|EE188868
genomic: TCTGCAGGAGGCCGTCATATTGCCGGTCAAGTTCCCACAGTTCTTCACGGgtgagctacg ... tatcccttagGCAAGCGGAGGCCTTGGAGGGCGTTTCTTTTATATGGCCCTCCTGGAACAG
EST: TCTGCAGGAGGCCGTCATATTGCCGGTCAAGTTCCCACAGTTCTTCACGG GCAAGCGGAGGCCTTGGAGGGCGTTTCTTTTATATGGCCCTCCTGGAACAGEST: gi|148972443|gb|EE023384.2|EE023384
genomic: TCTGCAGGAGGCCGTCATATTGCCGGTCAAGTTCCCACAGTTCTTCACGGgtgagctacg ... tatcccttagGCAAGCGGAGGCCTTGGAGGGCGTTTCTTTTATATGGCCCTCCTGGAACAG
EST: TCTGCAGGAGGCCGTCATATTGCCGGTCAAGTTCCCACAGTTCTTCACGG GCAAGCGGAGGCCTTGGAGGGCGTTTCTTTTATATGGCCCTCCTGGAACAGEST: gi|94475746|gb|EB704704.1|EB704704
genomic: TCTGCAGGAGGCCGTCATATTGCCGGTCAAGTTCCCACAGTTCTTCACGGgtgagctacg ... tatcccttagGCAAGCGGAGGCCTTGGAGGGCGTTTCTTTTATATGGCCCTCCTGGAACAG
EST: TCTGCAGGAGGCCGTCATATTGCCGGTCAAGTTCCCACAGTTCTTCACGG GCAAGCGGAGGCCTTGGAGGGCGTTTCTTTTATATGGCCCTCCCTGGA-CAEST: gi|148951265|gb|EC896965.2|EC896965
genomic: TCTGCAGGAGGCCGTCATATTGCCGGTCAAGTTCCCACAGTTCTTCACGGgtgagctacg ... tatcccttagGCAAGCGGAGGCCTTGGAGGGCGTTTCTTTTATATGGCCCTCC-TGGAACA
EST: TCTGCAGGAGGCCGTCATATTGCCGGTCAAGTTCCCACAGTTCTTCACGG GCAAGCGGAGGCCTTGGAGGGCGTTTCTTTTATATGGCCCTCCTGGAACAGEST: gi|31353375|gb|CD437732.1|CD437732
genomic: TCTGCAGGAGGCCGTCATATTGCCGGTCAAGTTCCCACAGTTCTTCACGGgtgagctacg ... tatcccttagGCAAGCGGAGGCCTTGGAGGGCGTTTCTTTTATATGGCCCTCCTGGAACAG
EST: TCTGCAGGAGGCCGTCATATTGCCGGTCAAGTTCCCACAGTTCTTCACGG GCAAGCGGAGGCCTTGGAGGGCGTTTCTTTTGTATGGCCCTCCGGGAACAGEST: gi|91875773|gb|EB405730.1|EB405730
genomic: TCTGCAGGAGGCCGTCATATTGCCGGTCAAGTTCCCACAGTTCTTCACGGgtgagctacg ... tatcccttagGCAAGCGGAGGCCTTGGAGGGCGTTTCTTTTATATGGCCCTCCTGGAACAG
EST: TCTGCAGGAGGCCGTCATATTGCCGGTCAAGTTCCCACAGTTCTTCACGG GCAAGCGGAGGCCTTGGAGGEST: gi|148956425|gb|EC902246.2|EC902246
genomic: TCTGCAGGAGGCCGTCATATTGCCGGTCAAGTTCCCACAGTTCTTCACGGgtgagctacg ... tatcccttagGCAAGCGGAGGCCTTGGAGG
EST: TCTGCAGGAGGCCGTCATATTGCCGGTCAAGTTCCCACAGTTCTTCACGG GCAAGCGGAGGCCTTGGAGGGCGTTTCTTTTATATGGCCCTCCTGGAACEST: gi|87152149|gb|DY396938.1|DY396938
genomic: TCTGCAGGAGGCCGTCATATTGCCGGTCAAGTTCCCACAGTTCTTCACGGgtgagctacg ... tatcccttagGCAAGCGGAGGCCTTGGAGGGCGTTTCTTTTATATGGCCCTCCTGGAAC
EST: TCTGCAGGAGGCCGTCATATTGCCGGTCAAGTTCCCACAGTTCTTCACGG GCAAGCGGAGGCCTTGGAGGGCGTTTCTTTTGTATGGCCCTCCTGGAACAGEST: gi|78120340|gb|DV538724.1|DV538724
genomic: TCTGCAGGAGGCCGTCATATTGCCGGTCAAGTTCCCACAGTTCTTCACGGgtgagctacg ... tatcccttagGCAAGCGGAGGCCTTGGAGGGCGTTTCTTTTATATGGCCCTCCTGGAACAG
EST: TCTGCAGGAGGCCGTCATATTGCCGGTCAAGTTCCCACAGTTCTTCACGG GCAAGCGGAGGCCTTGGAGGGCGTTTCTTTTATATGGCCCTTCTGGAACAGEST: gi|71331011|gb|DR802324.1|DR802324
genomic: TCTGCAGGAGGCCGTCATATTGCCGGTCAAGTTCCCACAGTTCTTCACGGgtgagctacg ... tatcccttagGCAAGCGGAGGCCTTGGAGGGCGTTTCTTTTATATGGCCCTCCTGGAACAG
EST: TCTCCAGGAGGCCGTCATATTGCCGGTCAAGTTCCCGCAGTTCTTCACGG GCAAGCGGAGGCCTTGGAGGGCGTTTCTATTGTATGGCCCTCCTGGAACAGEST: gi|149083571|gb|EE172905.2|EE172905
genomic: TCTGCAGGAGGCCGTCATATTGCCGGTCAAGTTCCCACAGTTCTTCACGGgtgagctacg ... tatcccttagGCAAGCGGAGGCCTTGGAGGGCGTTTCTTTTATATGGCCCTCCTGGAACAG
EST: TCTGCAGGAGGCCGTCATATTGCCGGTCAAGTTCCCACAGTTCTTCACGG GCAAGCGGAGGCCTTGGAGGGCGTTTCTTTTATATGGCCCTCCTGGAACAGEST: gi|22490133|gb|BU050056.1|BU050056
genomic: TCTGCAGGAGGCCGTCATATTGCCGGTCAAGTTCCCACAGTTCTTCACGGgtgagctacg ... tatcccttagGCAAGCGGAGGCCTTGGAGGGCGTTTCTTTTATATGGCCCTCCTGGAACAG
EST: TCTGCAGGAGGCCGTCATATTGCCGGTCAAGTTCCCACAGTTCTTCACGG GCAAGCGGAGGCCTTGGAGGGCGTTTCTTTTGTATGGCCCTCCTGGAACAGEST: gi|149081135|gb|EE170242.2|EE170242
genomic: TCTGCAGGAGGCCGTCATATTGCCGGTCAAGTTCCCACAGTTCTTCACGGgtgagctacg ... tatcccttagGCAAGCGGAGGCCTTGGAGGGCGTTTCTTTTATATGGCCCTCCTGGAACAG
EST: TCTGCAGGAGGCCGTCATATTGCCGGTCAAGTTCCCACAGTTCTTCACGG GCAAGCGGAGGCCTTGGAGGGCGTTTCTTTTATATGGCCCTCCTGGAACAGEST: gi|71441557|gb|DR822607.1|DR822607
genomic: TCTGCAGGAGGCCGTCATATTGCCGGTCAAGTTCCCACAGTTCTTCACGGgtgagctacg ... tatcccttagGCAAGCGGAGGCCTTGGAGGGCGTTTCTTTTATATGGCCCTCCTGGAACAG
EST: TCTGCAGGAGGCCGTCATATTGCCGGTCAAGTTCCCACAGTTCTTCACGG GCAAGCGGAGGCCTTGGAGGGCGTTTCTTTTATATGGCCCTCCTGGAACAGEST: gi|71437729|gb|DR818779.1|DR818779
genomic: TCTGCAGGAGGCCGTCATATTGCCGGTCAAGTTCCCACAGTTCTTCACGGgtgagctacg ... tatcccttagGCAAGCGGAGGCCTTGGAGGGCGTTTCTTTTATATGGCCCTCCTGGAACAG
EST: TCTGCAGGAGGCCGTCATATTGCCGGTCAAGTTCCCACAGTTCTTCACGG GCAAGCGGAGGCCTTGGAGGGCGTTTCTTTTATATGGCCCTCCTGGAACAGEST: gi|78078309|gb|DV506724.1|DV506724
genomic: TCTGCAGGAGGCCGTCATATTGCCGGTCAAGTTCCCACAGTTCTTCACGGgtgagctacg ... tatcccttagGCAAGCGGAGGCCTTGGAGGGCGTTTCTTTTATATGGCCCTCCTGGAACAG
EST: TCTGCAGGAGGCCGTCATATTGCCGGTCAAGTTCCCACAGTTCTTCACGG GCAAGCGGAGGCCTTGGAGGGCGTTTCTTTTATATGGCCCTCCTGGAACAGEST: gi|148968948|gb|EE019634.2|EE019634
genomic: TCTGCAGGAGGCCGTCATATTGCCGGTCAAGTTCCCACAGTTCTTCACGGgtgagctacg ... tatcccttagGCAAGCGGAGGCCTTGGAGGGCGTTTCTTTTATATGGCCCTCCTGGAACAG
EST: TCTGCAGGAGGCCGTCATATTGCCGGTCAAGTTCCCACAGTTCTTCACGG GCAAGCGGAGGCCTTGGAGGGCGTTTCTTTTATATGGCCCTCCTGGAACAG
genomic: TCTGCAGGAGGCCGTCATATTGCCGGTCAAGTTCCCACAGTTCTTCACGGgtgagctacg ... tatcccttagGCAAGCGGAGGCCTTGGAGGGCGTTTCTTTTATATGGCCCTCCTGGAACAG
caattttgaatggtttgtttgccagtatgaactaatgaagaatgctatcccttagGCAAGCGGAGGCCTTGGAGGGCGTTTCTTTTATATGGCCCTCCTGGAACAGGAAAGTCTTACTTGGCAAAAGCCGTCGCAACCGAGGCTGATTCAACATT
aactaat putative branch site (score: 104)
ctatccctt putative PPT
tttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgattcaaatctagaatttattgacctggtaaaaatttattttcaattttgaatggtttgtttgccagtatgaactaatgaagaatgctatcccttagGCAAGCGGAGGCCTTGGAGGGCGTTTCTTTTATATGGCCCTCCTGGAACAGGAAAGTCTTACTTGGCAAAAGCCGTCGCAACCGAGGCTGATTCAACATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- tgattca
- - - - - - - - - - - -tgacctg
- - - - - - - - - - - - - - - - - - - - - - - - - ttgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaatgc