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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tggaacacacatctctgttcttgtctattgtttatttagaaccgattgcagatatggcttgctaaatttcttacattacatccacatcctgtctatatagGTTCTGAAGAAAATATCAGCCCGACAAATCGCAAAAACAGCGTCACCGGTCGATCAATTTCGATGTGCATTGCAACAG

Basic information

species Zea mays
transcript GRMZM2G126795_T01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148964723|gb|EC905989.2|EC905989
EST:     GGCACTACCTTACCAAGGCCCAGCTCTACCCAAACTTTCTCCTTGACAAG                         GTTCTGAAGAAAATATCAGCCCGACAAATCGCAAAAACAGCGTCACCGGTC
genomic: GGCACTACCTTACCAAGGCCCAGCTCTACCCAAACTTTCTCCTTGACAAGgttggctgcc ... gtctatatagGTTCTGAAGAAAATATCAGCCCGACAAATCGCAAAAACAGCGTCACCGGTC
EST: gi|149104055|gb|EE289487.2|EE289487
EST:     GGCACTACCTTACCAAGGCCCAGCTCTACCCAAACTTTCTCCTTGACAAG                         GTTCTGAAGAAAATATCAGCCCGACAAATCGCAAAAACAGCGTCACCGGTC
genomic: GGCACTACCTTACCAAGGCCCAGCTCTACCCAAACTTTCTCCTTGACAAGgttggctgcc ... gtctatatagGTTCTGAAGAAAATATCAGCCCGACAAATCGCAAAAACAGCGTCACCGGTC
EST: gi|148974442|gb|EE025221.2|EE025221
EST:     GGCACTACCTTACCAAGGCCCAGCTCTACCCAAACTTTCTCCTTGACAAG                         GTTCTGAAGAAAATATCAGCCCGACAAATCGCAAAAACAGCGTCACCGGTC
genomic: GGCACTACCTTACCAAGGCCCAGCTCTACCCAAACTTTCTCCTTGACAAGgttggctgcc ... gtctatatagGTTCTGAAGAAAATATCAGCCCGACAAATCGCAAAAACAGCGTCACCGGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcagatatggcttgctaaatttcttacattacatccacatcctgtctatatagGTTCTGAAGAAAATATCAGCCCGACAAATCGCAAAAACAGCGTCACCGGTCGATCAATTTCGATGTGCATTGCAACAG
                      ttcttac  putative branch site (score: 2)
                                         tcctgtct  putative PPT
                 taaatttcttacatta  TA-rich tract