1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaaggaagaacagctcgaccccgccccccacgttagcgctagctagcccgccgctctgtcgaccttgttgacacgctgctcgcgtgcgtggtcggcggccagGTACCTGTGCCCGGAGCCGTACGCGGAGGAGAACGCGCGGTTCCTGCGCACGAACGGGATCCGGCTTCACCAGTTCGCCGTCGAAGGGAGCAAG
species | Zea mays |
transcript | GRMZM2G126765_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GACGCCGCCAACTTCCGCTTCCTGCTCTCCCTCAACCTGCGCTCCATCGT GTACCTGTGCCCGGAGCCGTACGCGGAGGAGAACGCGCGGTTCCTGCGCACEST: gi|31558117|gb|CD527329.1|CD527329
genomic: GACGCCGCCAACTTCCGCTTCCTGCTCTCCCTCAACCTGCGCTCCATCGTgtaaggaaga ... cggcggccagGTACCTGTGCCCGGAGCCGTACGCGGAGGAGAACGCGCGGTTCCTGCGCAC
EST: GACGCCGCCAACTTCCGCTTCCTGCTCTCCCTCAACCTGCGCTCCATCGT GTACCTGTGCCCGGAGCCGTACGCGGAGGAGAACGCGCGGTTCCTGCGCACEST: gi|211128137|gb|FL366473.1|FL366473
genomic: GACGCCGCCAACTTCCGCTTCCTGCTCTCCCTCAACCTGCGCTCCATCGTgtaaggaaga ... cggcggccagGTACCTGTGCCCGGAGCCGTACGCGGAGGAGAACGCGCGGTTCCTGCGCAC
EST: GACGCCGCCAACTTCCGCTTCCTGCTCTCCCTCAACCTGCGCTCCATCGT GTACCTGTGCCCGGAGCCGTACCCGGAGGAGAACGCGCGGTTCCTGCGCACEST: gi|78093024|gb|DV521398.1|DV521398
genomic: GACGCCGCCAACTTCCGCTTCCTGCTCTCCCTCAACCTGCGCTCCATCGTgtaaggaaga ... cggcggccagGTACCTGTGCCCGGAGCCGTACGCGGAGGAGAACGCGCGGTTCCTGCGCAC
EST: GACGCCGCCAACTTCCGCTTCCTGCTCTCCCTCAACCTGCGCTCCATCGT GTACCTGTGCCCGGAGCCGTACGCGGAGGAGAACGCGCGGTTCCTGCGCACEST: gi|211166824|gb|FL324152.1|FL324152
genomic: GACGCCGCCAACTTCCGCTTCCTGCTCTCCCTCAACCTGCGCTCCATCGTgtaaggaaga ... cggcggccagGTACCTGTGCCCGGAGCCGTACGCGGAGGAGAACGCGCGGTTCCTGCGCAC
EST: GACGCCGCCAACTTCCGCTTCCTGCTCTCCCTCAACCTGCGCTCCATCGT GTACCTGTGCCCGGAGCCGTACCCGGAGGAGAACGCGCGGTTCCTGCGCACEST: gi|211055639|gb|FL339119.1|FL339119
genomic: GACGCCGCCAACTTCCGCTTCCTGCTCTCCCTCAACCTGCGCTCCATCGTgtaaggaaga ... cggcggccagGTACCTGTGCCCGGAGCCGTACGCGGAGGAGAACGCGCGGTTCCTGCGCAC
EST: GACGCCGCCAACTTCCGCTTCCTGCTCTCCCTCAACCTGCGCTCCATCGT GTACCTGTGCCCGGAGCCGTACCCGGAGGAGAACGCGCGGTTCCTGCGCACEST: gi|76283506|gb|DV023074.1|DV023074
genomic: GACGCCGCCAACTTCCGCTTCCTGCTCTCCCTCAACCTGCGCTCCATCGTgtaaggaaga ... cggcggccagGTACCTGTGCCCGGAGCCGTACGCGGAGGAGAACGCGCGGTTCCTGCGCAC
EST: GACGCCGCCAACTTCCGCTTCCTGCTCTCCCTCAACCTGCGCTCCATCGT GTACCTGTGCCCGGAGCCGTACGCGGAGGAGAACGCGCGGTTCCTGCGCACEST: gi|78093023|gb|DV521397.1|DV521397
genomic: GACGCCGCCAACTTCCGCTTCCTGCTCTCCCTCAACCTGCGCTCCATCGTgtaaggaaga ... cggcggccagGTACCTGTGCCCGGAGCCGTACGCGGAGGAGAACGCGCGGTTCCTGCGCAC
EST: GACGCCGCCAACTTCCGCTTCCTGCTCTCCCTCAACCTGCGCTCCATCGT GTACCTGTGCCCGGAGCCGTACGCGGAGGAGAACGCGCGGTTCCTGCGCAC
genomic: GACGCCGCCAACTTCCGCTTCCTGCTCTCCCTCAACCTGCGCTCCATCGTgtaaggaaga ... cggcggccagGTACCTGTGCCCGGAGCCGTACGCGGAGGAGAACGCGCGGTTCCTGCGCAC
ccgccgctctgtcgaccttgttgacacgctgctcgcgtgcgtggtcggcggccagGTACCTGTGCCCGGAGCCGTACGCGGAGGAGAACGCGCGGTTCCTGCGCACGAACGGGATCCGGCTTCACCAGTTCGCCGTCGAAGGGAGCAAG
tgttgac putative branch site (score: 9)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggaagaacagctcgaccccgccccccacgttagcgctagctagcccgccgctctgtcgaccttgttgacacgctgctcgcgtgcgtggtcggcggccagGTACCTGTGCCCGGAGCCGTACGCGGAGGAGAACGCGCGGTTCCTGCGCACGAACGGGATCCGGCTTCACCAGTTCGCCGTCGAAGGGAGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGGAGCCG