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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcgcgcggcaagctttggtcaatcttctccttccatttcgtcgtcttggttcgagccgtgtccgccgaagattggagtttctaattcgtttgggcttgcccagGGGGGAGAGGACAGTGAAGAAGTTACGGCTCTCCAAGGCACTGACGATACCGGAGGGGACGACGGTGTTGGATGCGTGCCGGCGGATGGCGGCGAGGCGG

Basic information

species Zea mays
transcript GRMZM2G126656_T03
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126656_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os12g07190.1 (Oryza sativa), 3'ss of exon 1
gtaagcgcgcggcaagctttggtcaatcttctccttccatttcgtcgtcttggttcgagccgtgtccgccgaa-gattggagtttctaattcgtttgggcttgcccagGGGGGAGAGGACAGTGAAGAAGTTACGGCTCTCCAAGGCACTGACGATACCGGAGGGGACGACGGTGTTGGATGCGTGCCGGCGGATGGCGGCGAGGCGG
|||||| | |  | ||| |    | | |   ||||||| || | ||       || |   |||  |||| ||| ||||   |    |  |||  ||||  |||   || ||||||||||| |||| |||| |  |||| |||||||| |||||||||||||||||||||||||||| ||| |||||| || |||||||||||||| ||
gtaagcacac--cgagcctg---cgaacccttccttccgttccttctctcc--tttggttcgtagccgctgaatgattttgggggtttcttctgttgg--ttga--agCGGGGAGAGGACGGTGAGGAAGCTGAGGCTGTCCAAGGCGCTGACGATACCGGAGGGGACGACGGTGTCGGAGGCGTGCAGGAGGATGGCGGCGAGGAGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttcgagccgtgtccgccgaagattggagtttctaattcgtttgggcttgcccagGGGGGAGAGGACAGTGAAGAAGTTACGGCTCTCCAAGGCACTGACGATACCGGAGGGGACGACGGTGTTGGATGCGTGCCGGCGGATGGCGGCGAGGCGG
                              ttctaat  putative branch site (score: 2)
                                              cttgccc  putative PPT
                             tttctaatt  TA-rich tract