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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcgcgcggcaagctttggtcaatcttctccttccatttcgtcgtcttggttcgagccgtgtccgccgaagattggagtttctaattcgtttgggcttgcccagGGGGGAGAGGACAGTGAAGAAGTTACGGCTCTCCAAGGCACTGACGATACCGGAGGGGACGACGGTGTTGGATGCGTGCCGGCGGATGGCGGCGAGGCGG

Basic information

species Zea mays
transcript GRMZM2G126656_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126656_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os12g07190.1 (Oryza sativa), 3'ss of exon 1
gtaagcgcgcggcaagctttggtcaatcttctccttccatttcgtcgtcttggttcgagccgtgtccgccgaa-gattggagtttctaattcgtttgggcttgcccagGGGGGAGAGGACAGTGAAGAAGTTACGGCTCTCCAAGGCACTGACGATACCGGAGGGGACGACGGTGTTGGATGCGTGCCGGCGGATGGCGGCGAGGCGG
|||||| | |  | ||| |    | | |   ||||||| || | ||       || |   |||  |||| ||| ||||   |    |  |||  ||||  |||   || ||||||||||| |||| |||| |  |||| |||||||| |||||||||||||||||||||||||||| ||| |||||| || |||||||||||||| ||
gtaagcacac--cgagcctg---cgaacccttccttccgttccttctctcc--tttggttcgtagccgctgaatgattttgggggtttcttctgttgg--ttga--agCGGGGAGAGGACGGTGAGGAAGCTGAGGCTGTCCAAGGCGCTGACGATACCGGAGGGGACGACGGTGTCGGAGGCGTGCAGGAGGATGGCGGCGAGGAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71764856|gb|DR962793.1|DR962793
EST:     AATGGGAACAGGAAGGTCGCAACCAAGCCCGCCTCCCCCCACCAGCTCAC                         GGGGGAGAGGACAGTGAAGAAGTTACGGCTCTCCAAGGCACTGACGATACC
genomic: AATGGGAACAGGAAGGTCGCAACCAAGCCCGCCTCCCCCCACCAGCTCACgtaagcgcgc ... gcttgcccagGGGGGAGAGGACAGTGAAGAAGTTACGGCTCTCCAAGGCACTGACGATACC
EST: gi|71304764|gb|DR788496.1|DR788496
EST:     AATGGGAACAGGAAGGTCGCAACCAAGCCCGCCTCCCCCCACCAGCTCAC                         GGGGGAGAGGACAGTGAAGAAGTTACGGCTCTCCAAGGCACTGACGATACC
genomic: AATGGGAACAGGAAGGTCGCAACCAAGCCCGCCTCCCCCCACCAGCTCACgtaagcgcgc ... gcttgcccagGGGGGAGAGGACAGTGAAGAAGTTACGGCTCTCCAAGGCACTGACGATACC
EST: gi|211362912|gb|FL253415.1|FL253415
EST:     AATGGGAACAGGAAGGTCGCAACCAAGCCCGCCTCCCCCCACCAGCTCAC                         GGGGGAGAGGACAGTGAAGAAGTTACGGCTCTCCAAGGCACTGACGATACC
genomic: AATGGGAACAGGAAGGTCGCAACCAAGCCCGCCTCCCCCCACCAGCTCACgtaagcgcgc ... gcttgcccagGGGGGAGAGGACAGTGAAGAAGTTACGGCTCTCCAAGGCACTGACGATACC
EST: gi|78078047|gb|DV506462.1|DV506462
EST:     AATGGGAACAGGAAGGTCGCAACCAAGCCCGCCTCCCCCCACCAGCTCAC                         GGGGGAGAGGACAGTGAAGAAGTTACGGCTCTCCAAGGCACTGACGATACC
genomic: AATGGGAACAGGAAGGTCGCAACCAAGCCCGCCTCCCCCCACCAGCTCACgtaagcgcgc ... gcttgcccagGGGGGAGAGGACAGTGAAGAAGTTACGGCTCTCCAAGGCACTGACGATACC
EST: gi|78086694|gb|DV515087.1|DV515087
EST:     AATGGGAACAGGAAGGTCGCAACCAAGCCCGCCTCCCCCCACCAGCTCAC                         GGGGGAGAGGACAGTGAAGAAGTTACGGCTCTCCAAGGCACTGACGATACC
genomic: AATGGGAACAGGAAGGTCGCAACCAAGCCCGCCTCCCCCCACCAGCTCACgtaagcgcgc ... gcttgcccagGGGGGAGAGGACAGTGAAGAAGTTACGGCTCTCCAAGGCACTGACGATACC
EST: gi|71766059|gb|DR963996.1|DR963996
EST:     AATGGGAACAGGAAGGTCGCAACCAAGCCCGCCTCCCCCCACCAGCTCAC                         GGGGGAGAGGACAGTGAAGAAGTTACGGCTCTCCAAGGCACTGACGATACC
genomic: AATGGGAACAGGAAGGTCGCAACCAAGCCCGCCTCCCCCCACCAGCTCACgtaagcgcgc ... gcttgcccagGGGGGAGAGGACAGTGAAGAAGTTACGGCTCTCCAAGGCACTGACGATACC
EST: gi|148949419|gb|EC894878.2|EC894878
EST:     AATGGGAACAGGAAGGTCGCAACCAAGCCCGCCTCCCCCCACCAGCTCAC                         GGGGGAGAGGACAGTGAAGAAGTTACGGCTCTCCAAGGCACTGACGATACC
genomic: AATGGGAACAGGAAGGTCGCAACCAAGCCCGCCTCCCCCCACCAGCTCACgtaagcgcgc ... gcttgcccagGGGGGAGAGGACAGTGAAGAAGTTACGGCTCTCCAAGGCACTGACGATACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttcgagccgtgtccgccgaagattggagtttctaattcgtttgggcttgcccagGGGGGAGAGGACAGTGAAGAAGTTACGGCTCTCCAAGGCACTGACGATACCGGAGGGGACGACGGTGTTGGATGCGTGCCGGCGGATGGCGGCGAGGCGG
                              ttctaat  putative branch site (score: 2)
                                              cttgccc  putative PPT
                             tttctaatt  TA-rich tract