1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gttagtgacaattgctcatcgcttttattctttgttgaattagttgaagctagaaggtcagagtttttaaaatctacgatttggtttcagGTCTGATGGGGCTCAAGTGTACAGCCGCAAATGGTGAACATCCAGTTCCAGAAGAAGTTGCAGGCGTGTAGCTGCAGCCTGCAG
species | Zea mays |
transcript | GRMZM2G126566_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCAACGGTGTCACGGCCCTGCACGACAACAACCTTGACACCTGCCGACA GTCTGATGGGGCTCAAGTGTACAGCCGCAAATGGTGAACATCCAGTTCCAGEST: gi|91052994|gb|EB163412.1|EB163412
genomic: GGCAACGGTGTCACGGCCCTGCACGACAACAACCTTGACACCTGCCGACAgttagtgaca ... ttggtttcagGTCTGATGGGGCTCAAGTGTACAGCCGCAAATGGTGAACATCCAGTTCCAG
EST: GGGAACGGTGTCACGGCCCTGCACGACAACAACCTTGACACCTGCCGACA GTCTGATGGGGCTCAAGTGTACAGCCGCAAATGGTGAACATCCCGTTCCAGEST: gi|148950751|gb|EC896350.2|EC896350
genomic: GGCAACGGTGTCACGGCCCTGCACGACAACAACCTTGACACCTGCCGACAgttagtgaca ... ttggtttcagGTCTGATGGGGCTCAAGTGTACAGCCGCAAATGGTGAACATCCAGTTCCAG
EST: GGCAACGGTGTCACGGCCCTGCACGACAACAACCTTGACACCTGCCGACA GTCTGATGGGGCTCAAGTGTACAGCCGCAAATGGTGAACATCCAGTTCCAG
genomic: GGCAACGGTGTCACGGCCCTGCACGACAACAACCTTGACACCTGCCGACAgttagtgaca ... ttggtttcagGTCTGATGGGGCTCAAGTGTACAGCCGCAAATGGTGAACATCCAGTTCCAG
tgaattagttgaagctagaaggtcagagtttttaaaatctacgatttggtttcagGTCTGATGGGGCTCAAGTGTACAGCCGCAAATGGTGAACATCCAGTTCCAGAAGAAGTTGCAGGCGTGTAGCTGCAGCCTGCAG
agtttttaaaatcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtgacaattgctcatcgcttttattctttgttgaattagttgaagctagaaggtcagagtttttaaaatctacgatttggtttcagGTCTGATGGGGCTCAAGTGTACAGCCGCAAATGGTGAACATCCAGTTCCAGAAGAAGTTGCAGGCGTGTAGCTGCAGCCTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG