Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taaaccatgagcagaaagtgtattttgattccccgaccaggctgcataactgcatttttctatgaatgtgtactgaacgctgaactttggtctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATGGCACTGGAATGGTCAAG

Basic information

species Zea mays
transcript GRMZM2G126010_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126010_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os05g36290.2 (Oryza sativa), 3'ss of exon 1
taaaccatgagcagaaagtgtattttgattccccgac--caggctgcataactgcatttttctatg---aatgtgtactgaacgctga--actttggtctgttacagAATAGTTGA-GAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATGGCACTGGAATGGTCAAG
       | |  ||      |  |||    |  ||||  |  ||    |   | | ||| ||   |   ||   ||  ||     | |  ||     |||||| ||||| |  ||| ||||||||||||||||||| || ||||| || || ||||||||||||||||||||||||
-------ttattagtttacttggttttgcccagcgacttctagccttctgggtacttttgtcagagcctaacaagtgatgtgtaattatcacgcatttctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG

upper sequence: GRMZM2G126010_T01 (Zea mays), 3'ss of exon 1
lower sequence: Vv04s0044g00580.t01 (Vitis vinifera), 3'ss of exon 2
---taaaccatgagcagaaagtgtattt-tgattccccgaccaggctgcataactgcatttttctatgaatgtgtactgaacgctgaactttggtctgttacagAATAGTTGAGAATGGCTGAC---GAGGATATCCAGCCTATCGTATGTGACAATGGCACTGGAATGGTCAAG
    |||  ||  | | ||  |  |    ||| |    |  || || ||| ||||  |  ||| |   | | ||| |       | |  |||   ||  | |||   |    || ||||| ||    || |||||||||||  |||| ||||||||||| ||||||||||| |||
atggaaattatctgaaaaagctaaaaaggtgaatatttg-tcaagcagcaaaacttaaactttgttatactttgtcccctgacttcatattt---ctcatgcagGTAATAAAAGGATGGCCGATACTGAAGATATCCAGCCCCTCGTCTGTGACAATGGAACTGGAATGGTGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211474769|gb|FK976603.1|FK976603
EST:     AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAG                         AATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
genomic: AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
EST: gi|211477288|gb|FK976618.1|FK976618
EST:     AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAG                         AATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
genomic: AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
EST: gi|44681926|gb|CK786974.1|CK786974
EST:     AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAG                         AATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
genomic: AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
EST: gi|8367177|gb|BE050122.1|BE050122
EST:     AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAG                         AATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
genomic: AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
EST: gi|60672273|gb|DN475038.1|DN475038
EST:     AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAG                         AATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
genomic: AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
EST: gi|32909602|gb|CF014414.1|CF014414
EST:     AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAG                         AATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
genomic: AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
EST: gi|67040133|gb|CO466388.1|CO466388
EST:     GAGAGGCCCAACTGCCGAAGCCATCGATCGCCG-CACCGCGGTGGAGCAG                         AATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAAT
genomic: GAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTC-TTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAAT
EST: gi|211474768|gb|FK976602.1|FK976602
EST:     AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAG                         AATAGTTTAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
genomic: AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
EST: gi|116814875|gb|EC857503.1|EC857503
EST:     AGAGAGGCCCAACTGCCTAAGCCATCGATCGCCGCCACCTCTTCGAGCAG                         AATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCNGGTATGTGACAA
genomic: AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATC--GTATGTGACAA
EST: gi|32914790|gb|CF019602.1|CF019602
EST:     AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAG                         AATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
genomic: AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
EST: gi|211477284|gb|FK976614.1|FK976614
EST:     AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAG                         AATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
genomic: AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
EST: gi|211474766|gb|FK976600.1|FK976600
EST:     AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAG                         AATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
genomic: AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
EST: gi|67032946|gb|CO461695.1|CO461695
EST:     AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAG                         AATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
genomic: AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
EST: gi|211477283|gb|FK976613.1|FK976613
EST:     AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAG                         AATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
genomic: AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
EST: gi|31356169|gb|CD440526.1|CD440526
EST:     AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAG                         AATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
genomic: AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
EST: gi|31356251|gb|CD440608.1|CD440608
EST:     CCATCGATCGCCGCCACCTCTTCGAGCAG                         CTTAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
genomic: CCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
EST: gi|31354227|gb|CD438584.1|CD438584
EST:     GAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAG                         AATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
genomic: GAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
EST: gi|211474767|gb|FK976601.1|FK976601
EST:     AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAG                         AATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
genomic: AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
EST: gi|211221264|gb|FL030048.1|FL030048
EST:     AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAG                         AATAGTTGAGAA-GGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
genomic: AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
EST: gi|213170101|gb|FM191920.1|FM191920
EST:     CCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAG                         AATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
genomic: CCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
EST: gi|31348973|gb|CD433330.1|CD433330
EST:     AGAGAGGCCCACCTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAG                         AATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
genomic: AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
EST: gi|211510972|gb|FL146257.1|FL146257
EST:     AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAG                         AATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
genomic: AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
EST: gi|67040134|gb|CO466389.1|CO466389
EST:     AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCG-CACCTCGTCGAGCAG                         AATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
genomic: AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
EST: gi|31354413|gb|CD438770.1|CD438770
EST:     AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAG                         AATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
genomic: AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
EST: gi|18384034|gb|BM417234.1|BM417234
EST:     CCCAACTGCCGAAGCCATCGATCGCCGCCACCTTTTTGAGCAG                         AATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
genomic: CCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
EST: gi|211474773|gb|FK976607.1|FK976607
EST:     AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAG                         AATAGTTGAGAATGGMTGACGAGGATATCCAGCCTATCGTATGTGACAATG
genomic: AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
EST: gi|211477285|gb|FK976615.1|FK976615
EST:     AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAG                         AATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
genomic: AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
EST: gi|211477287|gb|FK976617.1|FK976617
EST:     AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAG                         AATAGTTGAGAAWGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
genomic: AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
EST: gi|211474765|gb|FK976599.1|FK976599
EST:     AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAG                         AATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
genomic: AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
EST: gi|211474774|gb|FK976608.1|FK976608
EST:     AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAG                         AATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
genomic: AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
EST: gi|211477290|gb|FK976620.1|FK976620
EST:     AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAG                         AATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
genomic: AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
EST: gi|211477281|gb|FK976611.1|FK976611
EST:     AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAG                         AATAGTTGAGAATGGCTGACGAGGATATTCAGCCTATCGTATGTGACAATG
genomic: AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
EST: gi|18384986|gb|BM418185.1|BM418185
EST:     AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAG                         AATAG-TGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
genomic: AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
EST: gi|211477279|gb|FK976609.1|FK976609
EST:     AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAG                         AATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
genomic: AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
EST: gi|211477286|gb|FK976616.1|FK976616
EST:     AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAG                         AATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
genomic: AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
EST: gi|211477291|gb|FK976621.1|FK976621
EST:     AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAG                         AATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
genomic: AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
EST: gi|211477282|gb|FK976612.1|FK976612
EST:     AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAG                         AATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
genomic: AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
EST: gi|31353181|gb|CD437538.1|CD437538
EST:     AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAG                         AATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
genomic: AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
EST: gi|211474772|gb|FK976606.1|FK976606
EST:     AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAG                         AATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
genomic: AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
EST: gi|211477280|gb|FK976610.1|FK976610
EST:     AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAG                         AATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
genomic: AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
EST: gi|91056023|gb|EB166441.1|EB166441
EST:     AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAG                         AATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
genomic: AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
EST: gi|211221262|gb|FL030046.1|FL030046
EST:     AGAGAGG-CCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAG                         AATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
genomic: AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
EST: gi|6021321|gb|AW066249.1|AW066249
EST:     AGAGAGGCCCAACTGCCGAAGCCATCGATTGCCGCCACCTCTTCGAGCAG                         AATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
genomic: AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
EST: gi|211221265|gb|FL030049.1|FL030049
EST:     AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAG                         AATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
genomic: AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
EST: gi|211221263|gb|FL030047.1|FL030047
EST:     AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAG                         AATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
genomic: AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG
EST: gi|33104171|gb|CF064131.1|CF064131
EST:     AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAG                         AATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGCGACAATG
genomic: AGAGAGGCCCAACTGCCGAAGCCATCGATCGCCGCCACCTCTTCGAGCAGgtgattattc ... tctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataactgcatttttctatgaatgtgtactgaacgctgaactttggtctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATGGCACTGGAATGGTCAAG
 gcataac  putative branch site (score: 3)
        atttttctatgaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
taaaccatgagcagaaagtgtattttgattccccgaccaggctgcataactgcatttttctatgaatgtgtactgaacgctgaactttggtctgttacagAATAGTTGAGAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATGGCACTGGAATGGTCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - -catgagc
- - - - - - - - - tgtattt
- - - - - - - - - - - - - - - - ccgacca
- - - - - - - - - - - - - - - - - - - - gctgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgaac