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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtttcaaccttctcagccaatgaagtcttcaatgaattattgtggctgaagtttagaaccgtttctgacatatcactgtttatgactgtttggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACACACTGTGGATCCTAGTGAAGCTTCATGAGGCTGTGCCAGGCAGGAGGTAC

Basic information

species Zea mays
transcript GRMZM2G125832_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G125832_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os12g30040.1 (Oryza sativa), 3'ss of exon 1
gtttcaaccttctcagccaatgaagtcttcaatgaattattgt-ggctgaagtttagaaccgtttctga-catatcactgtttatgactgtttggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACACACTGTGGATCCTAGTGAAGCTTCATGAGGCTGTGCCAGGCAGGAGGTAC
|| |||||           ||  | |||  | || ||| || |  |||||| | | | || ||||   | || |||       |||  | |||| |||| ||||||||||| ||||| ||| | ||| |||||||||||||||||||||||||||| ||||| || || ||||| ||||| ||||| ||||| |||||||||
gtatcaactagtagtattgat--actctgaagtgcattgttttcagctgaactgttgtacagtttgaaaacacatcctaacaaatggttctttgcactgtagGAGCTGGGGAATAATATCACTTACTGTTGCTTATTTCTGGCAACTGTACACACTCTGGATTCTTGTCAAGCTCCATGAAGCTGTACCAGGAAGGAGGTAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71766252|gb|DR964189.1|DR964189
EST:     CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTG                         GAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
genomic: CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTGgtaagaaagc ... tggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
EST: gi|71426295|gb|DR807345.1|DR807345
EST:     CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTG                         GAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
genomic: CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTGgtaagaaagc ... tggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
EST: gi|89764303|gb|DY691160.1|DY691160
EST:     CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTG                         GAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
genomic: CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTGgtaagaaagc ... tggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
EST: gi|148995053|gb|EE034367.2|EE034367
EST:     CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTG                         GAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
genomic: CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTGgtaagaaagc ... tggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
EST: gi|74233731|gb|DT641645.1|DT641645
EST:     CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTG                         GAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
genomic: CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTGgtaagaaagc ... tggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
EST: gi|50325971|gb|CO521097.1|CO521097
EST:     CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTG                         GAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
genomic: CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTGgtaagaaagc ... tggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
EST: gi|71430828|gb|DR811878.1|DR811878
EST:     TCGGCTTCCAGGCACTTCTCCTCCCCGCTCGCCTTCCCGGACCTCGGCTG                         GAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
genomic: TCGGCTTCCAGGCACTTCTCCTCCC-GCTCGCCTTCCCGGACCTCGGCTGgtaagaaagc ... tggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
EST: gi|78085037|gb|DV513430.1|DV513430
EST:     CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTG                         GAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGGAACTGTACAC
genomic: CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTGgtaagaaagc ... tggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
EST: gi|78113400|gb|DV531792.1|DV531792
EST:     CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTG                         GAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
genomic: CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTGgtaagaaagc ... tggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
EST: gi|148980665|gb|EE027283.2|EE027283
EST:     CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTG                         GAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
genomic: CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTGgtaagaaagc ... tggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
EST: gi|149071634|gb|EE160029.2|EE160029
EST:     CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTG                         GAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
genomic: CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTGgtaagaaagc ... tggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
EST: gi|91055399|gb|EB165817.1|EB165817
EST:     CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTG                         GAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
genomic: CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTGgtaagaaagc ... tggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
EST: gi|93012512|gb|EB638032.1|EB638032
EST:     CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTG                         GAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
genomic: CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTGgtaagaaagc ... tggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
EST: gi|71439655|gb|DR820705.1|DR820705
EST:     CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTG                         GAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
genomic: CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTGgtaagaaagc ... tggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
EST: gi|101401412|gb|EB822383.1|EB822383
EST:     CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTG                         GAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
genomic: CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTGgtaagaaagc ... tggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
EST: gi|148941768|gb|EC886729.2|EC886729
EST:     CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTG                         GAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
genomic: CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTGgtaagaaagc ... tggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
EST: gi|71772490|gb|DR970422.1|DR970422
EST:     CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTG                         GAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
genomic: CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTGgtaagaaagc ... tggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
EST: gi|74243040|gb|DT650954.1|DT650954
EST:     CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTG                         GAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
genomic: CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTGgtaagaaagc ... tggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
EST: gi|211453030|gb|FL325282.1|FL325282
EST:     CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTG                         GAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
genomic: CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTGgtaagaaagc ... tggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
EST: gi|211098836|gb|FL340516.1|FL340516
EST:     CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTG                         GAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
genomic: CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTGgtaagaaagc ... tggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
EST: gi|76914137|gb|DV165420.1|DV165420
EST:     CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTG                         GAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
genomic: CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTGgtaagaaagc ... tggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
EST: gi|76010987|gb|DT938157.1|DT938157
EST:     CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTG                         GAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTCCAC
genomic: CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTGgtaagaaagc ... tggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
EST: gi|74233140|gb|DT641054.1|DT641054
EST:     CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTG                         GAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
genomic: CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTGgtaagaaagc ... tggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
EST: gi|78085547|gb|DV513940.1|DV513940
EST:     CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTG                         GAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
genomic: CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTGgtaagaaagc ... tggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
EST: gi|211101474|gb|FL457328.1|FL457328
EST:     CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTG                         GAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
genomic: CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTGgtaagaaagc ... tggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
EST: gi|149106721|gb|EE188617.2|EE188617
EST:     CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTG                         GAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
genomic: CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTGgtaagaaagc ... tggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
EST: gi|91875166|gb|EB405123.1|EB405123
EST:     CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTG                         GAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
genomic: CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTGgtaagaaagc ... tggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
EST: gi|71426898|gb|DR807948.1|DR807948
EST:     CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTG                         GAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
genomic: CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTGgtaagaaagc ... tggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
EST: gi|71444351|gb|DR825401.1|DR825401
EST:     CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTG                         GAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
genomic: CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTGgtaagaaagc ... tggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
EST: gi|74240540|gb|DT648454.1|DT648454
EST:     CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTG                         GAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
genomic: CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTGgtaagaaagc ... tggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
EST: gi|50331730|gb|CO526856.1|CO526856
EST:     CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTG                         GAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
genomic: CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTGgtaagaaagc ... tggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
EST: gi|93281689|gb|EB673953.1|EB673953
EST:     CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTG                         GAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
genomic: CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTGgtaagaaagc ... tggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
EST: gi|88756124|gb|DY540265.1|DY540265
EST:     CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTG                         GAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
genomic: CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTGgtaagaaagc ... tggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
EST: gi|149001882|gb|EE038834.2|EE038834
EST:     CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTG                         GAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
genomic: CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTGgtaagaaagc ... tggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
EST: gi|71325403|gb|DR799382.1|DR799382
EST:     CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTG                         GAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
genomic: CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTGgtaagaaagc ... tggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
EST: gi|89756369|gb|DY686419.1|DY686419
EST:     CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTG                         GAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
genomic: CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTGgtaagaaagc ... tggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
EST: gi|71444350|gb|DR825400.1|DR825400
EST:     CTCGGCTTCCTGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTG                         GAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
genomic: CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTGgtaagaaagc ... tggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
EST: gi|91054811|gb|EB165229.1|EB165229
EST:     CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTG                         GAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC
genomic: CTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTGgtaagaaagc ... tggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 2 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 56

GCCGCGGCGGCAACGCCCGCTACGCCGCTTTCCACTCCCTCAACGCCGGCCTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTGgtaagaaagc ... tggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACACACTGTGGATCCTAGTGAAGCTTCATGAGGCTGTGCCAGGCAGGAGGTAC


Block sizes: 47 (upstream exon), 46 (downstream exon)
Score: 17

GCCGCGGCGGCAACGCCCGCTACGCCGCTTTCCACTCCCTCAACGCCGGCCTCGGCTTCCAGGCACTTCTCCTCCCGCTCGCCTTCCCGGACCTCGGCTGgtaagaaagc ... tggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACACACTGTGGATCCTAGTGAAGCTTCATGAGGCTGTGCCAGGCAGGAGGTAC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgaagtttagaaccgtttctgacatatcactgtttatgactgtttggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACACACTGTGGATCCTAGTGAAGCTTCATGAGGCTGTGCCAGGCAGGAGGTAC
                 ttctgac  putative branch site (score: 17)
      tttagaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttcaaccttctcagccaatgaagtcttcaatgaattattgtggctgaagtttagaaccgtttctgacatatcactgtttatgactgtttggactgcagGAGCTGGGGGATAATTTCATTGACTATTGCTTATTTCTGGCAACTGTACACACTGTGGATCCTAGTGAAGCTTCATGAGGCTGTGCCAGGCAGGAGGTAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - tcagcca
- - - - - - - - - - - - - - - - - - - - - - gctgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgactg