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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttaactgtatttctgttatgcaaataatagaaatgggggtatccttcctctcagcgagcataatctatttgctgtgatgatgtatatactttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGCATGTCAAGGCAGAGAACGGAGTCATTCTCACCAAGCCCTTCCTTGATGT

Basic information

species Zea mays
transcript GRMZM2G125556_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G125556_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g40890.2 (Oryza sativa), 3'ss of exon 1
cttaactgtatttctgttatgcaaataatagaaatgggggtatccttcctctcagcgagcataatctatttgctgtgatgatgtatatactttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGCATGTCAAGGCAGAGAACGGAGTCATTCTCACCAAGCCCTTCCTTGATGT
 |||       || ||  ||     |      | ||      |      | |        |    | || || ||      |   | |  | | |||||| |  |||||||||  |||| |||||||| ||||| ||||| |  ||||||||||| ||| |||||| | | ||||| |||||||||||||| ||||||||
attagaaactgttgtgggatcagtgtctctttagtgaattagtgtggatttttgtttgctacggccgatatgttgacgcattcattgttttctattgcagCTAGAGAGATGGCCGAGACAGTGTTCACTCCCTCGTTGGAGGGTATGAAGCATGTTAAGTCAGAGAGCAGTGTCATACTCACCAAGCCCTTTCTTGATGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29167717|gb|CB410977.1|CB410977
EST:     GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG                         GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: gi|211466770|gb|FL298415.1|FL298415
EST:     GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG                         GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: gi|76285485|gb|DV025053.1|DV025053
EST:     GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG                         GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: gi|211466772|gb|FL298417.1|FL298417
EST:     GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG                         GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: gi|116820850|gb|EC864112.1|EC864112
EST:     GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG                         GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: gi|91056435|gb|EB166853.1|EB166853
EST:     GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG                         GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: gi|211464240|gb|FL298404.1|FL298404
EST:     GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG                         GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: gi|211041272|gb|FL124819.1|FL124819
EST:     GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG                         GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: gi|211041274|gb|FL124821.1|FL124821
EST:     GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG                         GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: gi|211475759|gb|FL124816.1|FL124816
EST:     GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG                         GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: gi|211464236|gb|FL298400.1|FL298400
EST:     GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG                         GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: gi|211466766|gb|FL298411.1|FL298411
EST:     GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG                         GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: gi|211466762|gb|FL298407.1|FL298407
EST:     GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG                         GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: gi|211464239|gb|FL298403.1|FL298403
EST:     GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG                         GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: gi|211041277|gb|FL124824.1|FL124824
EST:     GGNAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAA--                         ---C-GAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: gi|211464237|gb|FL298401.1|FL298401
EST:     GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG                         GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: gi|211466761|gb|FL298406.1|FL298406
EST:     GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG                         GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: gi|76283007|gb|DV022575.1|DV022575
EST:     GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG                         GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: gi|211466767|gb|FL298412.1|FL298412
EST:     GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG                         GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: gi|211041276|gb|FL124823.1|FL124823
EST:     GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAA--                         ---C-GAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: gi|211041273|gb|FL124820.1|FL124820
EST:     GG-AAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG                         GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: gi|211466771|gb|FL298416.1|FL298416
EST:     GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG                         GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: gi|211475757|gb|FL124814.1|FL124814
EST:     GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG                         GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: gi|211475755|gb|FL124812.1|FL124812
EST:     GGAAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG                         GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: gi|71421128|gb|DR805308.1|DR805308
EST:     GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG                         GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: gi|211041270|gb|FL124817.1|FL124817
EST:     GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG                         GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: gi|211041271|gb|FL124818.1|FL124818
EST:     GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG                         GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: gi|93282356|gb|EB674620.1|EB674620
EST:     GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG                         GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: gi|211475756|gb|FL124813.1|FL124813
EST:     GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG                         GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: gi|211464238|gb|FL298402.1|FL298402
EST:     -GGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG                         GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcctctcagcgagcataatctatttgctgtgatgatgtatatactttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGCATGTCAAGGCAGAGAACGGAGTCATTCTCACCAAGCCCTTCCTTGATGT
                                          tactttctt  CT-rich tract
               ataatctattt  TA-rich tract