1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gttcgtcggctattgatgattctgaaacgttttgatggtttgtttttgcgagcttttgatcgaactgtgcgtgtggttttcatggggattctgttttgcgcagAGGACTCGTATCCCAACGAGACGAAGCGGGCGGAGCTGTCGGTGCAGTTGAACCTCACAGACAGGCAGCTTCAGATGTGGTTCTGCCACCGCCGGCTCAA
species | Zea mays |
transcript | GRMZM2G125294_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGTCATGAAGACGCCCTACCAGCTGGAGGTCCTCGAGAGGACGTACGCAG AGGACTCGTATCCCAACGAGACGAAGCGGGCGGAGCTGTCGGTGCAGTTGAEST: gi|16746105|gb|BM032535.1|BM032535
genomic: CGTCATGAAGACGCCCTACCAGCTGGAGGTCCTCGAGAGGACGTACGCAGgttcgtcggc ... ttttgcgcagAGGACTCGTATCCCAACGAGACGAAGCGGGCGGAGCTGTCGGTGCAGTTGA
EST: CGTCATGAAGACGCCCTACCAGCTGGAGGTCCTCGAGAGGACGTACGCAG AGGACTCGTATCCCAACGAGACGAAGCGGGCGGAGCTGTCGGTGCAGTTGAEST: gi|88758442|gb|DY542811.1|DY542811
genomic: CGTCATGAAGACGCCCTACCAGCTGGAGGTCCTCGAGAGGACGTACGCAGgttcgtcggc ... ttttgcgcagAGGACTCGTATCCCAACGAGACGAAGCGGGCGGAGCTGTCGGTGCAGTTGA
EST: CGTCATGAAGACGCCCTACCAGCTGGAGGTCCTCGAGAGGACGTACGCAG AGGACTCGTATCCCAACGAGACGAAGCGGGCGGAGCTGTCGGTGCAGTTGAEST: gi|16746000|gb|BM032430.1|BM032430
genomic: CGTCATGAAGACGCCCTACCAGCTGGAGGTCCTCGAGAGGACGTACGCAGgttcgtcggc ... ttttgcgcagAGGACTCGTATCCCAACGAGACGAAGCGGGCGGAGCTGTCGGTGCAGTTGA
EST: CGTCATGAAGACGCCCTACCAGCTGGAGGTCCTCGAGAGGACGTACGCAG AGGACTCGTATCCCAACGAGACGAAGCGGGCGGAGCTGTCGGTGCAGTTGAEST: gi|18384775|gb|BM417974.1|BM417974
genomic: CGTCATGAAGACGCCCTACCAGCTGGAGGTCCTCGAGAGGACGTACGCAGgttcgtcggc ... ttttgcgcagAGGACTCGTATCCCAACGAGACGAAGCGGGCGGAGCTGTCGGTGCAGTTGA
EST: CGTCATGAAGACGCCCTACCAGCTGGAGGTCCTCGAGAGGACGTACGCAG AGGACTCGTATCCCAACGAGACGAAGCGGGCGGAGCTGTCGGTGCAGTTGAEST: gi|18384772|gb|BM417971.1|BM417971
genomic: CGTCATGAAGACGCCCTACCAGCTGGAGGTCCTCGAGAGGACGTACGCAGgttcgtcggc ... ttttgcgcagAGGACTCGTATCCCAACGAGACGAAGCGGGCGGAGCTGTCGGTGCAGTTGA
EST: CGTCATGAAGACGCCCTACCAGCTGGAGGTCCTCGAGAGGACGTACGCAG AGGACTCGTATCCCAACGAGACGAAGCGGGCGGAGCTGTCGGTGCAGTTGA
genomic: CGTCATGAAGACGCCCTACCAGCTGGAGGTCCTCGAGAGGACGTACGCAGgttcgtcggc ... ttttgcgcagAGGACTCGTATCCCAACGAGACGAAGCGGGCGGAGCTGTCGGTGCAGTTGA
cgagcttttgatcgaactgtgcgtgtggttttcatggggattctgttttgcgcagAGGACTCGTATCCCAACGAGACGAAGCGGGCGGAGCTGTCGGTGCAGTTGAACCTCACAGACAGGCAGCTTCAGATGTGGTTCTGCCACCGCCGGCTCAA
ttttgat putative branch site (score: 48)
ttctgtttt putative PPT
ttttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtcggctattgatgattctgaaacgttttgatggtttgtttttgcgagcttttgatcgaactgtgcgtgtggttttcatggggattctgttttgcgcagAGGACTCGTATCCCAACGAGACGAAGCGGGCGGAGCTGTCGGTGCAGTTGAACCTCACAGACAGGCAGCTTCAGATGTGGTTCTGCCACCGCCGGCTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG