Sequence
atgc intronic sequence ATGC exonic sequencegtgagcgcctactgctactgaacttcccgttgaaatttctctgctgcttacctacctagtttccttgcatggacttttcctgcagAACACGTACAACACGCTCCACGGCGGCGCGGTGGCGGCCGTAGCCGAGGCCGTCGGGATGGCGTGCGCGCGGGCAGCCGCCGGGGATCGAGAGATGTTCC
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|21390948|gb|BQ528997.1|BQ528997EST: CCCCGACCCCGCGGATCTCTTGCACCATCACCGTCTCGCACGCCGTGACT AACACGTACAACACGCTCCACGGCGGCGCGGTGGCGGCCGTAGCCGAGGCC
genomic: CCCCGACCCCGCGGATCTCTTGCACCATCACCGTCTCGCACGCCGTGACTgtgagcgcct ... tttcctgcagAACACGTACAACACGCTCCACGGCGGCGCGGTGGCGGCCGTAGCCGAGGCC
EST:
gi|211489894|gb|FL473952.1|FL473952EST: CCCCGACCCCGCGGATCTCTTGCACCATCACCGTCTCGCACGCCGTGACT AACACGTACAACACGCTCCACGGCGGCGCGGTGGCGGCCGTAGCCGAGGCC
genomic: CCCCGACCCCGCGGATCTCTTGCACCATCACCGTCTCGCACGCCGTGACTgtgagcgcct ... tttcctgcagAACACGTACAACACGCTCCACGGCGGCGCGGTGGCGGCCGTAGCCGAGGCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgaaatttctctgctgcttacctacctagtttccttgcatggacttttcctgcagAACACGTACAACACGCTCCACGGCGGCGCGGTGGCGGCCGTAGCCGAGGCCGTCGGGATGGCGTGCGCGCGGGCAGCCGCCGGGGATCGAGAGATGTTCC
tgcttac putative branch site (score: 2)
cttttcctgc putative PPT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagcgcctactgctactgaacttcccgttgaaatttctctgctgcttacctacctagtttccttgcatggacttttcctgcagAACACGTACAACACGCTCCACGGCGGCGCGGTGGCGGCCGTAGCCGAGGCCGTCGGGATGGCGTGCGCGCGGGCAGCCGCCGGGGATCGAGAGATGTTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG