1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gttcttgctgtgaacttgttcttgtggacataagaaaacaccacaagttcataatgttttgtgaaaacttagttcaattttaacattttctgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACTTCTCCTTCAACTTTTAGATAATAAGGAAAGCGGGGATACAGCTTGGCAG
species | Zea mays |
transcript | GRMZM2G124965_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAG GACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACTEST: gi|148986560|gb|EE030320.2|EE030320
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
EST: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAG GACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACTEST: gi|211322042|gb|FL425804.1|FL425804
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
EST: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAG GACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACTEST: gi|71769408|gb|DR967345.1|DR967345
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
EST: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAG GACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACTEST: gi|149111705|gb|EE190850.2|EE190850
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
EST: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAG GACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACTEST: gi|149106183|gb|EE291871.2|EE291871
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
EST: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAG GACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACTEST: gi|91055562|gb|EB165980.1|EB165980
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
EST: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAG GACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACTEST: gi|71437018|gb|DR818068.1|DR818068
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
EST: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAG GACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACTEST: gi|78083626|gb|DV512019.1|DV512019
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
EST: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAG GACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACTEST: gi|149009510|gb|EE041499.2|EE041499
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
EST: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAG GACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACTEST: gi|148954197|gb|EC899605.2|EC899605
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
EST: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAG GACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACTEST: gi|91050700|gb|EB161118.1|EB161118
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
EST: GAGGATACTGCTGCTGTGGCTCGAGACGGCGGAGGTTGCGCCGATGGCAG GACAAATTTTGAGGGGGAACATGATACTGTCACTGAGAAGGACCTAAAACTEST: gi|94472323|gb|EB701281.1|EB701281
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
EST: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAG GACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACTEST: gi|211171635|gb|FL426200.1|FL426200
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
EST: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAG GACAAATTTTGAGGGTGAACATGATACTGTCACEST: gi|31354728|gb|CD439085.1|CD439085
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCAC
EST: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAG GACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACTEST: gi|211452653|gb|FL419421.1|FL419421
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
EST: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAAGTTGCGCCGATGGCAG GACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAAACEST: gi|211256230|gb|FL369156.1|FL369156
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAA-C
EST: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAG GACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAEST: gi|93017144|gb|EB642664.1|EB642664
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAA
EST: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAG GACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACTEST: gi|91054396|gb|EB164814.1|EB164814
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
EST: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAG GACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACTEST: gi|76015844|gb|DT943014.1|DT943014
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
EST: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAG GACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACTEST: gi|86469996|gb|DY236366.1|DY236366
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
EST: GAGGATACTGCTGCTGTGTCTCGGGACGGCGGAGGTTGCGCCTATGGCAG GACAAATTTTGAGGGTGAACATGATACTGTCACTGAAAAGGACCTAAAACTEST: gi|211154695|gb|FL375831.1|FL375831
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
EST: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAG GACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGAC
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGAC
agttcataatgttttgtgaaaacttagttcaattttaacattttctgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACTTCTCCTTCAACTTTTAGATAATAAGGAAAGCGGGGATACAGCTTGGCAG
cattttct CT-rich tract
ttagttcaattttaac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcttgctgtgaacttgttcttgtggacataagaaaacaccacaagttcataatgttttgtgaaaacttagttcaattttaacattttctgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACTTCTCCTTCAACTTTTAGATAATAAGGAAAGCGGGGATACAGCTTGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA