1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ggttgacagttttactctcgatagtcgatactactgtttgcacatacccccttgattttgggacgtgattaatattcaaactccagatattttgaaatagCCCCCGCCACGAAATTCTTCAGCCATCGTGGAGGGGTTCAGTTCAGGGGAGGACTCGACTCAGGAAACAGGAGCACGAGCGGAGCAGAAGGCAGTCATGG
species | Zea mays |
transcript | GRMZM2G124557_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGTCCGTTCCAGTCCCAGCTCGAGCTTGAAGGTTGAAACAACAAGCAAG CCCCCGCCACGAAATTCTTCAGCCATCGTGGAGGGGTTCAGTTCAGGGGAGEST: gi|76910998|gb|DV164124.1|DV164124
genomic: CTGTCCGTTCCAGTCCCAGCTCGAGCTTGAAGGTTGAAACAACAAGCAAGgtgagcacac ... tttgaaatagCCCCCGCCACGAAATTCTTCAGCCATCGTGGAGGGGTTCAGTTCAGGGGAG
EST: CTGTCCGTTCCAGTCCCAGCTCGAGCTTGAAGGTTGAAACAACAAGCAAG CCCCCGCCACGAAATTCTTCAGCCATCGTGGAGGGGTTCAGTTCAGGGGAGEST: gi|78080907|gb|DV509319.1|DV509319
genomic: CTGTCCGTTCCAGTCCCAGCTCGAGCTTGAAGGTTGAAACAACAAGCAAGgtgagcacac ... tttgaaatagCCCCCGCCACGAAATTCTTCAGCCATCGTGGAGGGGTTCAGTTCAGGGGAG
EST: CTGTCCGTTCCAGTCCCAGCTCGAGCTTGAAGGTTGAAACAACAAGCAAG AEST: gi|78080907|gb|DV509319.1|DV509319
genomic: CTGTCCGTTCCAGTCCCAGCTCGAGCTTGAAGGTTGAAACAACAAGCAAGgtgagcacac ... tttgaaatag-
EST: CTGTCCGTTCCAGTCCCAGCTCGAGCTTGAAGGTTGAAACAACAAGCAAG AEST: gi|78080907|gb|DV509319.1|DV509319
genomic: CTGTCCGTTCCAGTCCCAGCTCGAGCTTGAAGGTTGAAACAACAAGCAAGgtgagcacac ... tttgaaatag-
EST: CTGTCCGTTCCAGTCCCAGCTCGAGCTTGAAGGTTGAAACAACAAGCAAG AEST: gi|78080907|gb|DV509319.1|DV509319
genomic: CTGTCCGTTCCAGTCCCAGCTCGAGCTTGAAGGTTGAAACAACAAGCAAGgtgagcacac ... tttgaaatag-
EST: CTGTCCGTTCCAGTCCCAGCTCGAGCTTGAAGGTTGAAACAACAAGCAAG AEST: gi|78080907|gb|DV509319.1|DV509319
genomic: CTGTCCGTTCCAGTCCCAGCTCGAGCTTGAAGGTTGAAACAACAAGCAAGgtgagcacac ... tttgaaatag-
EST: CTGTCCGTTCCAGTCCCAGCTCGAGCTTGAAGGTTGAAACAACAAGCAAG AEST: gi|78080907|gb|DV509319.1|DV509319
genomic: CTGTCCGTTCCAGTCCCAGCTCGAGCTTGAAGGTTGAAACAACAAGCAAGgtgagcacac ... tttgaaatag-
EST: CTGTCCGTTCCAGTCCCAGCTCGAGCTTGAAGGTTGAAACAACAAGCAAG AEST: gi|78080907|gb|DV509319.1|DV509319
genomic: CTGTCCGTTCCAGTCCCAGCTCGAGCTTGAAGGTTGAAACAACAAGCAAGgtgagcacac ... tttgaaatag-
EST: CTGTCCGTTCCAGTCCCAGCTCGAGCTTGAAGGTTGAAACAACAAGCAAG AEST: gi|78080907|gb|DV509319.1|DV509319
genomic: CTGTCCGTTCCAGTCCCAGCTCGAGCTTGAAGGTTGAAACAACAAGCAAGgtgagcacac ... tttgaaatag-
EST: CTGTCCGTTCCAGTCCCAGCTCGAGCTTGAAGGTTGAAACAACAAGCAAG AEST: gi|78080907|gb|DV509319.1|DV509319
genomic: CTGTCCGTTCCAGTCCCAGCTCGAGCTTGAAGGTTGAAACAACAAGCAAGgtgagcacac ... tttgaaatag-
EST: CTGTCCGTTCCAGTCCCAGCTCGAGCTTGAAGGTTGAAACAACAAGCAAG AEST: gi|78080907|gb|DV509319.1|DV509319
genomic: CTGTCCGTTCCAGTCCCAGCTCGAGCTTGAAGGTTGAAACAACAAGCAAGgtgagcacac ... tttgaaatag-
EST: CTGTCCGTTCCAGTCCCAGCTCGAGCTTGAAGGTTGAAACAACAAGCAAG AEST: gi|78080907|gb|DV509319.1|DV509319
genomic: CTGTCCGTTCCAGTCCCAGCTCGAGCTTGAAGGTTGAAACAACAAGCAAGgtgagcacac ... tttgaaatag-
EST: CTGTCCGTTCCAGTCCCAGCTCGAGCTTGAAGGTTGAAACAACAAGCAAG AEST: gi|78080907|gb|DV509319.1|DV509319
genomic: CTGTCCGTTCCAGTCCCAGCTCGAGCTTGAAGGTTGAAACAACAAGCAAGgtgagcacac ... tttgaaatag-
EST: CTGTCCGTTCCAGTCCCAGCTCGAGCTTGAAGGTTGAAACAACAAGCAAG AEST: gi|78080907|gb|DV509319.1|DV509319
genomic: CTGTCCGTTCCAGTCCCAGCTCGAGCTTGAAGGTTGAAACAACAAGCAAGgtgagcacac ... tttgaaatag-
EST: CTGTCCGTTCCAGTCCCAGCTCGAGCTTGAAGGTTGAAACAACAAGCAAG AEST: gi|78080907|gb|DV509319.1|DV509319
genomic: CTGTCCGTTCCAGTCCCAGCTCGAGCTTGAAGGTTGAAACAACAAGCAAGgtgagcacac ... tttgaaatag-
EST: CTGTCCGTTCCAGTCCCAGCTCGAGCTTGAAGGTTGAAACAACAAGCAAG AEST: gi|78080907|gb|DV509319.1|DV509319
genomic: CTGTCCGTTCCAGTCCCAGCTCGAGCTTGAAGGTTGAAACAACAAGCAAGgtgagcacac ... tttgaaatag-
EST: CTGTCCGTTCCAGTCCCAGCTCGAGCTTGAAGGTTGAAACAACAAGCAAG AEST: gi|71443999|gb|DR825049.1|DR825049
genomic: CTGTCCGTTCCAGTCCCAGCTCGAGCTTGAAGGTTGAAACAACAAGCAAGgtgagcacac ... tttgaaatag-
EST: CTGTCCGTTCCAGTCCCAGCTCGAGCTTGAAGGTTGAAACAACAAGCAAG CCCCCGCCACGAAATTCTTCAGCCATCGTGGAGGGGTTCAGTTCAGGGGAGEST: gi|78093295|gb|DV521669.1|DV521669
genomic: CTGTCCGTTCCAGTCCCAGCTCGAGCTTGAAGGTTGAAACAACAAGCAAGgtgagcacac ... tttgaaatagCCCCCGCCACGAAATTCTTCAGCCATCGTGGAGGGGTTCAGTTCAGGGGAG
EST: CTGTCCGTTCCAGTCCCAGCTCGAGCTTGAAGGTTGAAACAACAAGCAAG CCCCCGCCACGAAATTCTTCAGCCATCGTGGAGGGGTTCAGTTCAGGGGAGEST: gi|89762555|gb|DY690082.1|DY690082
genomic: CTGTCCGTTCCAGTCCCAGCTCGAGCTTGAAGGTTGAAACAACAAGCAAGgtgagcacac ... tttgaaatagCCCCCGCCACGAAATTCTTCAGCCATCGTGGAGGGGTTCAGTTCAGGGGAG
EST: CTGTCCGTTCCAGCCCCAGCTCGAGCTTGAAGGTTGAAACAACAAGCAAG CCCCCGCCACGAAATTCTTCAGCCATCGTGGAGGGGTTCAGTTCAGGGGAG
genomic: CTGTCCGTTCCAGTCCCAGCTCGAGCTTGAAGGTTGAAACAACAAGCAAGgtgagcacac ... tttgaaatagCCCCCGCCACGAAATTCTTCAGCCATCGTGGAGGGGTTCAGTTCAGGGGAG
acccccttgattttgggacgtgattaatattcaaactccagatattttgaaatagCCCCCGCCACGAAATTCTTCAGCCATCGTGGAGGGGTTCAGTTCAGGGGAGGACTCGACTCAGGAAACAGGAGCACGAGCGGAGCAGAAGGCAGTCATGG
gattaat putative branch site (score: 8)
tgattaatattcaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggttgacagttttactctcgatagtcgatactactgtttgcacatacccccttgattttgggacgtgattaatattcaaactccagatattttgaaatagCCCCCGCCACGAAATTCTTCAGCCATCGTGGAGGGGTTCAGTTCAGGGGAGGACTCGACTCAGGAAACAGGAGCACGAGCGGAGCAGAAGGCAGTCATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG