1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cttatgtgatgcttgatttctttctttttaggaaccccacttttagttataccaaaggaactgatcattctttatcttaatggttcactacttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACAAGTTTTGATTAGACTAGAAGACAGCATCATATTTGGCCTTTTGGAGAGA
species | Zea mays |
transcript | GRMZM2G124365_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACAEST: gi|211128223|gb|FL382946.1|FL382946
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACAEST: gi|71304463|gb|DR788345.1|DR788345
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACAEST: gi|32842618|gb|CD982299.1|CD982299
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACAEST: gi|32842597|gb|CD982278.1|CD982278
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACAEST: gi|32842683|gb|CD982364.1|CD982364
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACAEST: gi|211042173|gb|FL385501.1|FL385501
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACAEST: gi|32842669|gb|CD982350.1|CD982350
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACAEST: gi|67040651|gb|CO466906.1|CO466906
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACAEST: gi|211323552|gb|FL394714.1|FL394714
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA GGTAGAGAGGGTTGATCGMAAGTGACATATTGACATTGGATAGCATCAGACEST: gi|32842206|gb|CD981887.1|CD981887
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCG-AAGTGACATATTGACATTGGATAGCATCAGAC
EST: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACAEST: gi|89763811|gb|DY690849.1|DY690849
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACAEST: gi|211131047|gb|FL391845.1|FL391845
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACAEST: gi|32842514|gb|CD982195.1|CD982195
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACAEST: gi|211326342|gb|FL425003.1|FL425003
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACAEST: gi|32842415|gb|CD982096.1|CD982096
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACAEST: gi|32842444|gb|CD982125.1|CD982125
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: GGAACAAGGGGCTCCGCGCGGCCAACAAGCTCCGCAACGCCCATAGCTAA GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACAEST: gi|32842790|gb|CD982471.1|CD982471
genomic: GGAACAAGGGGCTCCGCGCGGCCAACAA-CTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACAEST: gi|32842552|gb|CD982233.1|CD982233
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: AGGAACAAGGGGCTCCGCGCGGGCAACAACTCCGCAACGCCCATAGCTAA GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACAEST: gi|32842439|gb|CD982120.1|CD982120
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACAEST: gi|211236776|gb|FL420045.1|FL420045
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACAEST: gi|211222127|gb|FL422630.1|FL422630
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACAEST: gi|32842376|gb|CD982057.1|CD982057
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACAEST: gi|32842412|gb|CD982093.1|CD982093
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACAEST: gi|37422138|gb|CF648774.1|CF648774
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACAEST: gi|67041520|gb|CO467775.1|CO467775
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACAEST: gi|149077332|gb|EE166011.2|EE166011
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACAEST: gi|32842408|gb|CD982089.1|CD982089
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACAEST: gi|148931381|gb|EC874300.2|EC874300
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACAEST: gi|67040128|gb|CO466383.1|CO466383
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACAEST: gi|32842587|gb|CD982268.1|CD982268
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACAEST: gi|211217423|gb|FL401820.1|FL401820
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACAEST: gi|211035045|gb|FL415129.1|FL415129
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
gttataccaaaggaactgatcattctttatcttaatggttcactacttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACAAGTTTTGATTAGACTAGAAGACAGCATCATATTTGGCCTTTTGGAGAGA
tcttaat putative branch site (score: 3)
ctactttt putative PPT
attctttatcttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttatgtgatgcttgatttctttctttttaggaaccccacttttagttataccaaaggaactgatcattctttatcttaatggttcactacttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACAAGTTTTGATTAGACTAGAAGACAGCATCATATTTGGCCTTTTGGAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA