Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgtcaatgttctcccgccctcgttagcgatccttatgccagtccgctcgtcttgagtctcctgtgcagattcgtggcgcttgtttgtgcagATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGAGCGGTCTAAGGATCCTAACCGGCAG

Basic information

species Zea mays
transcript GRMZM2G124091_T05
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G124091_T04 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g55974.1 (Oryza sativa), 3'ss of exon 1
------gttcgtcaatgttct--cccgccctcgttagcgatccttatgccagtc--cgctcgtcttgagtctcctgtgcagattcgtggcgcttgtttgtgcagATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGAGCGGTCTAAGGATCCTAACCGGCAG
        | |||      |   | | ||||| ||    |    ||  | |||    |||||| ||  |  || ||||  |||| || ||| | |||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||||||  ||||||| ||||||||||| ||||||
gttagtcctagtcgccccaccggctcaccctctttgattaggtgtagccgagttaaagctcgtttttggcatcttgtgaggatttgttgcgttcgtttctgcagGTATATCTCCTGGGACGACTACTTCATGGCGATCGCGTTCCTTTCGGCCAAGCGGTCCAAGGATCCTAATCGGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211125807|gb|FL321198.1|FL321198
EST:     TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGCGGGAAGG                         ATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGA
genomic: TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGGgttcgtcaat ... gtttgtgcagATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGA
EST: gi|211359478|gb|FL332719.1|FL332719
EST:     TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGG                         ATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGA
genomic: TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGGgttcgtcaat ... gtttgtgcagATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGA
EST: gi|211477981|gb|FL231676.1|FL231676
EST:     TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGG                         ATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGA
genomic: TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGGgttcgtcaat ... gtttgtgcagATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGA
EST: gi|71298203|gb|DR785078.1|DR785078
EST:     TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGG                         ATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGA
genomic: TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGGgttcgtcaat ... gtttgtgcagATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGA
EST: gi|211477980|gb|FL231675.1|FL231675
EST:     TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGG                         ATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGA
genomic: TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGGgttcgtcaat ... gtttgtgcagATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGA
EST: gi|211477983|gb|FL231678.1|FL231678
EST:     TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGS                         ATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGA
genomic: TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGGgttcgtcaat ... gtttgtgcagATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGA
EST: gi|211477979|gb|FL231674.1|FL231674
EST:     TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGG                         ATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGA
genomic: TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGGgttcgtcaat ... gtttgtgcagATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGA
EST: gi|211477985|gb|FL231680.1|FL231680
EST:     TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGG                         ATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGA
genomic: TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGGgttcgtcaat ... gtttgtgcagATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGA
EST: gi|211477978|gb|FL231673.1|FL231673
EST:     TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGG                         ATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGA
genomic: TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGGgttcgtcaat ... gtttgtgcagATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccagtccgctcgtcttgagtctcctgtgcagattcgtggcgcttgtttgtgcagATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGAGCGGTCTAAGGATCCTAACCGGCAG
                                          cttgttt  CT-rich tract