1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaaatgaagctagcgacgagccgacgactccatcccgtcctgctgcgagaagaccaccacctggtcctggtgggatgctctccttgatccttgtaatcttggttttcgcagGCGGGCACCAGCTCGGCGGCGGCGAAAGCCACCGGCGAGATCGCTAGTACCGCCGCCACCGCATGCAACAGCCCAAGTTCCTGCAATTG
species | Zea mays |
transcript | GRMZM2G123387_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCTGCGAGAAGACTACCACCACCGGCTCCGGGGCGCTCGATGCCGGCGAG GCGGGCACCAGCTCGGCGGEST: gi|211492421|gb|FL233183.1|FL233183
genomic: CCTGCGAGAAGACTACCACCACCGGCTCCGGGGCGCTCGATGCCGGCGAGgtaaatgaag ... gttttcgcagGCGGGCACCAGCTCGGCGG
EST: CCTGCGAGAAGACTACCACCACCGGCTCCGGGGCGCTCGATGCCGGCGAG GCGGGCACCAGCTCGGCGGCGGCGAAAGCCACCGGCGAGATCGCTAGTACCEST: gi|211489545|gb|FL233178.1|FL233178
genomic: CCTGCGAGAAGACTACCACCACCGGCTCCGGGGCGCTCGATGCCGGCGAGgtaaatgaag ... gttttcgcagGCGGGCACCAGCTCGGCGGCGGCGAAAGCCACCGGCGAGATCGCTAGTACC
EST: CCTGCGAGAAGACTACCACCACCGGCTCCGGGGCGCTCGATGCCGGCGAR GCGGGCACCAGCTCGGCGGCGGCGAAAGEST: gi|211492418|gb|FL233180.1|FL233180
genomic: CCTGCGAGAAGACTACCACCACCGGCTCCGGGGCGCTCGATGCCGGCGAGgtaaatgaag ... gttttcgcagGCGGGCACCAGCTCGGCGGCGGCGAAAG
EST: CCTGCGAGAAGACTACCACCACCGGCTCCGGGGCGCTCGATGCCGGCGAG GCGGGCACCAGCTCGGCGGCGGCGAAAGCCACCGGCGAGATCGCTAGTACCEST: gi|30031986|gb|CB833837.1|CB833837
genomic: CCTGCGAGAAGACTACCACCACCGGCTCCGGGGCGCTCGATGCCGGCGAGgtaaatgaag ... gttttcgcagGCGGGCACCAGCTCGGCGGCGGCGAAAGCCACCGGCGAGATCGCTAGTACC
EST: CCTGCGAGAAGACTACCACCACCGGCTCCGGGGCGCTCGATGCCGGCGAG GCGGGCACCAGCTCGGCGGCGGCGAAAGCCACCGGCGAGATCGCTAGTACCEST: gi|71308427|gb|DR790449.1|DR790449
genomic: CCTGCGAGAAGACTACCACCACCGGCTCCGGGGCGCTCGATGCCGGCGAGgtaaatgaag ... gttttcgcagGCGGGCACCAGCTCGGCGGCGGCGAAAGCCACCGGCGAGATCGCTAGTACC
EST: CCTGCGAGAAGACTACCACCACCGGCTCCGGGGCGCTCGATGCCGGCGAG GCGGGCACCAGCTCGGCGGCGGCGAAAGCCACCGGCGAGATCGCTAGTACCEST: gi|211489544|gb|FL233177.1|FL233177
genomic: CCTGCGAGAAGACTACCACCACCGGCTCCGGGGCGCTCGATGCCGGCGAGgtaaatgaag ... gttttcgcagGCGGGCACCAGCTCGGCGGCGGCGAAAGCCACCGGCGAGATCGCTAGTACC
EST: CCTGCGAGAAGACTACCACCACCGGCTCCGGGGCGCTCGATGCCGGCGAG GCGGGCACCAGCTCGGCGGCGGCGAAAGCCACCGGCGAGATCGCTAGTAEST: gi|211492423|gb|FL233185.1|FL233185
genomic: CCTGCGAGAAGACTACCACCACCGGCTCCGGGGCGCTCGATGCCGGCGAGgtaaatgaag ... gttttcgcagGCGGGCACCAGCTCGGCGGCGGCGAAAGCCACCGGCGAGATCGCTAGTA
EST: CCTGCGAGAAGACTACCACCACCGGCTCCGGGGCGCTCGATGCCGGCGAG GCGGGCACCAGCTCGGCGGCGGCGAAAGCCACCGGCGAGATCGCTAGTACCEST: gi|211492422|gb|FL233184.1|FL233184
genomic: CCTGCGAGAAGACTACCACCACCGGCTCCGGGGCGCTCGATGCCGGCGAGgtaaatgaag ... gttttcgcagGCGGGCACCAGCTCGGCGGCGGCGAAAGCCACCGGCGAGATCGCTAGTACC
EST: CCTGCGAGAAGACTACCACCACCGGCTCCGGGGCGCTCGATGCCGGCGAG GCGGGCACCAGCTCGGCGGCGGCGAAAGCCACCGGCGAGATCGCTAGTACCEST: gi|211492419|gb|FL233181.1|FL233181
genomic: CCTGCGAGAAGACTACCACCACCGGCTCCGGGGCGCTCGATGCCGGCGAGgtaaatgaag ... gttttcgcagGCGGGCACCAGCTCGGCGGCGGCGAAAGCCACCGGCGAGATCGCTAGTACC
EST: CCTGCGAGAAGACTACCACCACCGGCTCCGGGGCGCTCGATGCCGGCGAG GCGGGCACCAGCTCGGCGGCGGCGAAAGCCACCGGCGAGATCGCTAGTACC
genomic: CCTGCGAGAAGACTACCACCACCGGCTCCGGGGCGCTCGATGCCGGCGAGgtaaatgaag ... gttttcgcagGCGGGCACCAGCTCGGCGGCGGCGAAAGCCACCGGCGAGATCGCTAGTACC
ccacctggtcctggtgggatgctctccttgatccttgtaatcttggttttcgcagGCGGGCACCAGCTCGGCGGCGGCGAAAGCCACCGGCGAGATCGCTAGTACCGCCGCCACCGCATGCAACAGCCCAAGTTCCTGCAATTG
ccttgat putative branch site (score: 1)
ttttcgc putative PPT
ttgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatgaagctagcgacgagccgacgactccatcccgtcctgctgcgagaagaccaccacctggtcctggtgggatgctctccttgatccttgtaatcttggttttcgcagGCGGGCACCAGCTCGGCGGCGGCGAAAGCCACCGGCGAGATCGCTAGTACCGCCGCCACCGCATGCAACAGCCCAAGTTCCTGCAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -CGGCGGCG