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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atctagactttgttttgcccccccagttgttgtcaactttaataatgtatggtctatggtgtaactttgagatttttgttggcattggcgatggttgcagATATCTGATCAGTTGAAGACACGCTTCTCATCAGGGCTGTCGCTACCACAAATCTGTGAGAATTTTGTTAAGGCAGCATATGACCCACGAATCTCAGGGA

Basic information

species Zea mays
transcript GRMZM2G122843_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G122843_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g49570.1 (Oryza sativa), 3'ss of exon 1
-atctagactttgttttgcccccccagttgttgtcaactttaataatgtatggtctatggtgtaactttgagatttttgttggcattggcgatggttgcagATATCTGATCAGTTGAAGACACGCTTCTCATCAGGGCTGTCGCTACCACAAATCTGTGAGAATTTTGTTAAGGCAGCATATGACCCACGAATCTCAGGGA
   ||||  |||    || |          || | ||| ||  | |  | ||    |||    |  ||||   ||||| |||   |||   |  |   |||||||| ||||||||||||||||||||||| || ||||||||  | ||||||||||| |||||||||||||| || ||||||||||| ||||| || ||||
ttgctagtttttaggatgacttgttttaatttttgaacatttgtcaattttgtgacatgaccca-ttttggattttttattgtgtttgtttactgccacagATATCCGATCAGTTGAAGACACGCTTCTCTTCCGGGCTGTCATTGCCACAAATCTGCGAGAATTTTGTTAAAGCTGCATATGACCCGCGAATATCGGGGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8102637|gb|AW927287.1|AW927287
EST:     AGCGCGTCCGCAAGGGAAGCGTCCTCAACATGAAGCTTCGCGGCGAG                         ATATCTGATCAGCTGAAGACACGCTTCTCATCAGGGCTGTCGCTACCACAA
genomic: AGCGTGTCCGCAAGGGAAGCGTCCTCAACATGAAGCTTCGCGGCGAGgtgtttgctt ... atggttgcagATATCTGATCAGTTGAAGACACGCTTCTCATCAGGGCTGTCGCTACCACAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtatggtctatggtgtaactttgagatttttgttggcattggcgatggttgcagATATCTGATCAGTTGAAGACACGCTTCTCATCAGGGCTGTCGCTACCACAAATCTGTGAGAATTTTGTTAAGGCAGCATATGACCCACGAATCTCAGGGA
             gtgtaac  putative branch site (score: 3)
                          atttttgtt  TA-rich tract