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...gatgctcttatgcagccaaagttgtgttaaagttttttttttcttgggaatttatataattacaaagcttctaatgctgtgtcctcatttaccaattcagCAATCCTTGATATACCTGATGGCTATGATTGATGAGCCTCTGTACCCAATTGCTGTACTGATTGATGAGCTTAAGAATGAGGACATCCAGTTGCGTCTAA
species | Zea mays |
transcript | GRMZM2G122135_T04 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACGCCGTCGGCGAAGCAGCCGGGCAAGAGCCCGATCCAGACCCCGCGAG CAATCCTTGATATACCTGATGGCTATGATTGATGAGCCTCTGTACCCAATTEST: gi|211254031|gb|FL158980.1|FL158980
genomic: CACGCCGTCGGCGAAGCAGCCGGGCAAGAGCCCGATCCAGACCCCGCGAGgtcagttcag ... accaattcagCAATCCTTGATATACCTGATGGCTATGATTGATGAGCCTCTGTACCCAATT
EST: CACGCCGTCGGCGAAGCAGCCGGGCAAGAGCCCGATCCAGACCCCGCGAG CAATCCTTGATATACCTGATGGCTATGATTGATGAGCCTCTGTACCCAATTEST: gi|211104779|gb|FL158965.1|FL158965
genomic: CACGCCGTCGGCGAAGCAGCCGGGCAAGAGCCCGATCCAGACCCCGCGAGgtcagttcag ... accaattcagCAATCCTTGATATACCTGATGGCTATGATTGATGAGCCTCTGTACCCAATT
EST: CACGCCGTCGGCGAAGCAGCCGGGCAAGAGCCCGATCCAGACCCCGCGAG CAATCCTTGATATACCTGATGGCTATGATTGATGAGCCTCTGTACCCAATTEST: gi|149081317|gb|EE170431.2|EE170431
genomic: CACGCCGTCGGCGAAGCAGCCGGGCAAGAGCCCGATCCAGACCCCGCGAGgtcagttcag ... accaattcagCAATCCTTGATATACCTGATGGCTATGATTGATGAGCCTCTGTACCCAATT
EST: CACGCCGTCGGCGAAGCAGCCGGGCAAGAGCCCGATCCAGACCCCGCGAG CAATCCTTGATATACCTGATGGCTATGATTGATGAGCCTCTGTACCCAATTEST: gi|211254029|gb|FL158978.1|FL158978
genomic: CACGCCGTCGGCGAAGCAGCCGGGCAAGAGCCCGATCCAGACCCCGCGAGgtcagttcag ... accaattcagCAATCCTTGATATACCTGATGGCTATGATTGATGAGCCTCTGTACCCAATT
EST: CACGCCGTCGGCGAAGCAGCCGGGCAAGAGCCCGATCCAGACCCCGCGAG CAATCCTTGATATACCTGATGGCTATGATTGATGAGCCTCTGTACCCAATTEST: gi|87155925|gb|DY400714.1|DY400714
genomic: CACGCCGTCGGCGAAGCAGCCGGGCAAGAGCCCGATCCAGACCCCGCGAGgtcagttcag ... accaattcagCAATCCTTGATATACCTGATGGCTATGATTGATGAGCCTCTGTACCCAATT
EST: CACGCCGTCGGCGAAGCAGCCGGGCAAGAGCCCGATCCAGACCCCGCGAG CAATCCTTGATATACCTGATGGCTATGATTGATGAGCCTCTGTACCCAATTEST: gi|211254030|gb|FL158979.1|FL158979
genomic: CACGCCGTCGGCGAAGCAGCCGGGCAAGAGCCCGATCCAGACCCCGCGAGgtcagttcag ... accaattcagCAATCCTTGATATACCTGATGGCTATGATTGATGAGCCTCTGTACCCAATT
EST: CACGCCGTCGGCGAAGCAGCCGGGCAAGAGCCCGATCCAGACCCCGCGAG CAATCCTTGATATACCTGATGGCTATGAEST: gi|211104780|gb|FL158966.1|FL158966
genomic: CACGCCGTCGGCGAAGCAGCCGGGCAAGAGCCCGATCCAGACCCCGCGAGgtcagttcag ... accaattcagCAATCCTTGATATACCTGATGGCTATGA
EST: CACGCCGTCGGNGAAGCAGCCGGGCAAGAGCCCGATCCAGACCCCGCGAG CAATCCTTGATATACCTGATGGCTATGATTGATGAGCCTCTGTAACCAATTEST: gi|211104776|gb|FL158962.1|FL158962
genomic: CACGCCGTCGGCGAAGCAGCCGGGCAAGAGCCCGATCCAGACCCCGCGAGgtcagttcag ... accaattcagCAATCCTTGATATACCTGATGGCTATGATTGATGAGCCTCTGTACCCAATT
EST: CACGCCGTCGGCGAAGCAGCCGGGCAAGAGCCCGATCCAGACCCCGCGAG CAATCCTTGATATACCTGATGGCTATGATTGATGAGCCTCTGTACCCAATTEST: gi|211254024|gb|FL158973.1|FL158973
genomic: CACGCCGTCGGCGAAGCAGCCGGGCAAGAGCCCGATCCAGACCCCGCGAGgtcagttcag ... accaattcagCAATCCTTGATATACCTGATGGCTATGATTGATGAGCCTCTGTACCCAATT
EST: CACGCCGTCGGCGAAGCAGCCGGGCAAGAGCCCGATCCAGACCCCGCGAG CAATCCTTGATATACCTGATGGCTATGATTGATGAGCCTCTGTACCCAATTEST: gi|211254028|gb|FL158977.1|FL158977
genomic: CACGCCGTCGGCGAAGCAGCCGGGCAAGAGCCCGATCCAGACCCCGCGAGgtcagttcag ... accaattcagCAATCCTTGATATACCTGATGGCTATGATTGATGAGCCTCTGTACCCAATT
EST: CACGCCGTCGGCGAAGCAGCCGGGCAAGAGCCCGATCCAGACCCCGCGAG CAATCCTTGATATACCTGATGGCTATGATTGATGAGCCTCTGTAACCAATTEST: gi|31361797|gb|CD446154.1|CD446154
genomic: CACGCCGTCGGCGAAGCAGCCGGGCAAGAGCCCGATCCAGACCCCGCGAGgtcagttcag ... accaattcagCAATCCTTGATATACCTGATGGCTATGATTGATGAGCCTCTGTACCCAATT
EST: CACGCCGTCGGCGAAGCAGCCGGGCAAGAGCCCGATCCAGACCCCGCGAG CAATCCTTGATATACCTGATGGCTATGATTGATGAGCCTCTGTACCCAATTEST: gi|211254032|gb|FL158981.1|FL158981
genomic: CACGCCGTCGGCGAAGCAGCCGGGCAAGAGCCCGATCCAGACCCCGCGAGgtcagttcag ... accaattcagCAATCCTTGATATACCTGATGGCTATGATTGATGAGCCTCTGTACCCAATT
EST: CACGCCGTCGGCGAAGCAGCCGGGCAAGAGCCCGATCCAGACCCCGCGAG CAATCCTTGATATACCTGATGGCTATGATTGATGAGCCTCTGTACCCAATTEST: gi|211254025|gb|FL158974.1|FL158974
genomic: CACGCCGTCGGCGAAGCAGCCGGGCAAGAGCCCGATCCAGACCCCGCGAGgtcagttcag ... accaattcagCAATCCTTGATATACCTGATGGCTATGATTGATGAGCCTCTGTACCCAATT
EST: CACGCCGTCGGCGAAGCAGCCGGGCAAGAGCCCGATCCAAACCCCGCGAG CAATCCTTGATATACCTGATGGCTATGATTGATGAGCCTCTGTACCCAATTEST: gi|22472790|gb|BU037270.1|BU037270
genomic: CACGCCGTCGGCGAAGCAGCCGGGCAAGAGCCCGATCCAGACCCCGCGAGgtcagttcag ... accaattcagCAATCCTTGATATACCTGATGGCTATGATTGATGAGCCTCTGTACCCAATT
EST: CACGCCGTCGGCGAAGCAGCCGGGCAAGAGCCCGATCCAGACCCCGCGAG CAATCCTTGATATACCTGATGGCTATGATTGATGAGCCTCTGTACCCAATTEST: gi|211254021|gb|FL158970.1|FL158970
genomic: CACGCCGTCGGCGAAGCAGCCGGGCAAGAGCCCGATCCAGACCCCGCGAGgtcagttcag ... accaattcagCAATCCTTGATATACCTGATGGCTATGATTGATGAGCCTCTGTACCCAATT
EST: CACGCCGTCGGCGAAGCAGCCGGGCAAGAGCCCGATCCAGACCCCGCGAG CAATCCTTGATATACCTGATGGCTATGATTGATGAGCCTCTGTACCCAATTEST: gi|26457426|gb|CA829009.1|CA829009
genomic: CACGCCGTCGGCGAAGCAGCCGGGCAAGAGCCCGATCCAGACCCCGCGAGgtcagttcag ... accaattcagCAATCCTTGATATACCTGATGGCTATGATTGATGAGCCTCTGTACCCAATT
EST: CACGCCGTCGGCGAAGCAGCCGGGCAAGAGCCCGATCCAGACCCCGCGAG CAATCCTTGATATACCTGATGGCTATGATTGATGAGCCTCTGTACCCAATTEST: gi|67022275|gb|CO451024.1|CO451024
genomic: CACGCCGTCGGCGAAGCAGCCGGGCAAGAGCCCGATCCAGACCCCGCGAGgtcagttcag ... accaattcagCAATCCTTGATATACCTGATGGCTATGATTGATGAGCCTCTGTACCCAATT
EST: CACGCCGTCGGCGAAGCAGCCGGGCAAGAGCCCGATCCAGACCCCGCGAG CAATCCTTGATATACCTGATGGCTATGATTGATGAGCCTCTGTACCCAATTEST: gi|211419377|gb|FL436538.1|FL436538
genomic: CACGCCGTCGGCGAAGCAGCCGGGCAAGAGCCCGATCCAGACCCCGCGAGgtcagttcag ... accaattcagCAATCCTTGATATACCTGATGGCTATGATTGATGAGCCTCTGTACCCAATT
EST: CACGCCGTCGGCGAAGCAGCCGGGCAAGAGCCCGATCCAGACCCCGCGAG CAATCCTTGATATACCTGACGGCTATGATEST: gi|211389439|gb|FL474314.1|FL474314
genomic: CACGCCGTCGGCGAAGCAGCCGGGCAAGAGCCCGATCCAGACCCCGCGAGgtcagttcag ... accaattcagCAATCCTTGATATACCTGATGGCTATGAT
EST: CACGCCGTCGGCGAAGCAGCCGGGCAAGAGCCCGATCCAGACCCCGCGAG CAATCCTTGATATACCTGATGGCTATGATT
genomic: CACGCCGTCGGCGAAGCAGCCGGGCAAGAGCCCGATCCAGACCCCGCGAGgtcagttcag ... accaattcagCAATCCTTGATATACCTGATGGCTATGATT
gggaatttatataattacaaagcttctaatgctgtgtcctcatttaccaattcagCAATCCTTGATATACCTGATGGCTATGATTGATGAGCCTCTGTACCCAATTGCTGTACTGATTGATGAGCTTAAGAATGAGGACATCCAGTTGCGTCTAA
ttctaat putative branch site (score: 57)
tttatataattacaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatgctcttatgcagccaaagttgtgttaaagttttttttttcttgggaatttatataattacaaagcttctaatgctgtgtcctcatttaccaattcagCAATCCTTGATATACCTGATGGCTATGATTGATGAGCCTCTGTACCCAATTGCTGTACTGATTGATGAGCTTAAGAATGAGGACATCCAGTTGCGTCTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT