Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactccacccattttctccttcctgccgtgtgaaacccagcacccaaaccctaacttaaactgatcttatttaataacaaatgtatgaacatgtattatgcatactaactttttttattatagGGTGTGCACCCAATCTTCTTCACTGGGTCCTCCGCTGCTTCTAGTCACGCATCTAAATCCGGAGTTGCCAGCATTCGCTTGAGGTGCCGGACCACAGCAC

Basic information

species Zea mays
transcript GRMZM2G121942_T03
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211191930|gb|FL276018.1|FL276018
EST:     GTCTCCGTCAGACCCTTCGCCAGGTCTTCTTCGGCGGCGAGCACCGCCAG                         GGTGTGCACCCAATCTTCTTCACTGGGTCCTCCGCTGCTTCTAGTCACGCA
genomic: GTCTCCGTCAGACCCTTCGCCAGGTCTTCTTCGGCGGCGAGCACCGCCAGgtactccacc ... tttattatagGGTGTGCACCCAATCTTCTTCACTGGGTCCTCCGCTGCTTCTAGTCACGCA
EST: gi|211194324|gb|FL276026.1|FL276026
EST:     GTCTCCGTCAGACCCTTCGCCAGGTCTTCTTCGGCGGCGAGCACCGCCAG                         GGTGTGCACCCAATCTTCTTCACTGGGTCCTCCGCTGCTTCTAGTCACGCA
genomic: GTCTCCGTCAGACCCTTCGCCAGGTCTTCTTCGGCGGCGAGCACCGCCAGgtactccacc ... tttattatagGGTGTGCACCCAATCTTCTTCACTGGGTCCTCCGCTGCTTCTAGTCACGCA
EST: gi|211191923|gb|FL276011.1|FL276011
EST:     GTCTCCGTCAGACCCTTCGCCAGGTCTTCTTCGGCGGCGAGCACCGCCAG                         GGTGTGCACCCAATCTTCTTCACTGGGTCCTCCGCTGCTTCTAGTCACGCA
genomic: GTCTCCGTCAGACCCTTCGCCAGGTCTTCTTCGGCGGCGAGCACCGCCAGgtactccacc ... tttattatagGGTGTGCACCCAATCTTCTTCACTGGGTCCTCCGCTGCTTCTAGTCACGCA
EST: gi|211191934|gb|FL276022.1|FL276022
EST:     GTCTCCGTCAGACCCTTCGCCAGGTCTTCTTCGGCGGCGAGCACCGCCAG                         GGTGTGCACCCAATCTTCTTCACTGGGTCCTCCGCTGCTTCTAGTCACGCA
genomic: GTCTCCGTCAGACCCTTCGCCAGGTCTTCTTCGGCGGCGAGCACCGCCAGgtactccacc ... tttattatagGGTGTGCACCCAATCTTCTTCACTGGGTCCTCCGCTGCTTCTAGTCACGCA
EST: gi|211194323|gb|FL276025.1|FL276025
EST:     GTCTCCGTCAGACCCTTCGCCAGGTCTTCTTCGGCGGCGAGCACCGCCAG                         GGTGTGCACCCAATCTTCTTCACTGGGTCCTCCGCTGCTTCTAGTCACGCA
genomic: GTCTCCGTCAGACCCTTCGCCAGGTCTTCTTCGGCGGCGAGCACCGCCAGgtactccacc ... tttattatagGGTGTGCACCCAATCTTCTTCACTGGGTCCTCCGCTGCTTCTAGTCACGCA
EST: gi|211191922|gb|FL276010.1|FL276010
EST:     GTCTCCGTCAGACCCTTCGCCAGGTCTTCTTCGGCGGCGAGCACCGCCAG                         GGTGTGCACCCAATCTTCTTCACTGGGTCCTCCGCTGCTTCTAGTCACGCA
genomic: GTCTCCGTCAGACCCTTCGCCAGGTCTTCTTCGGCGGCGAGCACCGCCAGgtactccacc ... tttattatagGGTGTGCACCCAATCTTCTTCACTGGGTCCTCCGCTGCTTCTAGTCACGCA
EST: gi|211359713|gb|FL342921.1|FL342921
EST:     GTCTCCGTCAGACCCTTCGCCAGGTCTTCTTCCGCGGCGAGCACCGCCA-                         GGTGTGCATCCAATCTTCTTCACTGGGTCCTCCGCTGCTTCTAGTCACGCA
genomic: GTCTCCGTCAGACCCTTCGCCAGGTCTTCTTCGGCGGCGAGCACCGCCAGgtactccacc ... tttattatagGGTGTGCACCCAATCTTCTTCACTGGGTCCTCCGCTGCTTCTAGTCACGCA
EST: gi|211194325|gb|FL276027.1|FL276027
EST:     GTCTCCGTCAGACCCTTCGCCAGGTCTTCTTCGGCGGCGAGCACCGCCAG                         GGTGTGCACCCAATCTTCTTCACTGGGTCCTCCGCTGCTTCTAGTCACGCA
genomic: GTCTCCGTCAGACCCTTCGCCAGGTCTTCTTCGGCGGCGAGCACCGCCAGgtactccacc ... tttattatagGGTGTGCACCCAATCTTCTTCACTGGGTCCTCCGCTGCTTCTAGTCACGCA
EST: gi|211088952|gb|FL225885.1|FL225885
EST:     GTCTCCGTCAGACCCTTCGCCAGGTCTTCTTCGGCGGCGAGCACCGCCAG                         GGTGTGCACCCAATCTTCTTCACTGGGTCCTCCGCTGCTTCTAGTCACGCA
genomic: GTCTCCGTCAGACCCTTCGCCAGGTCTTCTTCGGCGGCGAGCACCGCCAGgtactccacc ... tttattatagGGTGTGCACCCAATCTTCTTCACTGGGTCCTCCGCTGCTTCTAGTCACGCA
EST: gi|211191933|gb|FL276021.1|FL276021
EST:     GTCTCCGTCAGACCCTTCGCCAGGTCTTCTTCGGCGGCGAGCACCGCCAG                         GGTGTGCACCCAATCTTCTTCACTGGGTCCTCCGCTGCTTCTAGTCACGCA
genomic: GTCTCCGTCAGACCCTTCGCCAGGTCTTCTTCGGCGGCGAGCACCGCCAGgtactccacc ... tttattatagGGTGTGCACCCAATCTTCTTCACTGGGTCCTCCGCTGCTTCTAGTCACGCA
EST: gi|211191925|gb|FL276013.1|FL276013
EST:     GTCTCCGTCAGACCCTTCGCCAGGTCTTCTTCGGCGGCGAGCACCGCCAG                         GGTGTGCACCCAATCTTCTTCACTGGGTCCTCCGCTGCTTCTAGTCACGCA
genomic: GTCTCCGTCAGACCCTTCGCCAGGTCTTCTTCGGCGGCGAGCACCGCCAGgtactccacc ... tttattatagGGTGTGCACCCAATCTTCTTCACTGGGTCCTCCGCTGCTTCTAGTCACGCA
EST: gi|211191928|gb|FL276016.1|FL276016
EST:     TCTCCGTCAGACCCTTCGCCAGGTCTTCTTCGGCGGCGAGCACCGCCAAG                         GGTGTGCACCCAATCTTCTTCACTGGGTCCTCCGCTGCTTCTAGTCACGC
genomic: TCTCCGTCAGACCCTTCGCCAGGTCTTCTTCGGCGGCGAGCACCGCC-AGgtactccacc ... tttattatagGGTGTGCACCCAATCTTCTTCACTGGGTCCTCCGCTGCTTCTAGTCACGC
EST: gi|37387079|gb|CF630732.1|CF630732
EST:     GTCTCCGTCAGACCCTTCGCCAGGT-TTCTTCGGCGGCGAGCACCGCCAG                         GGTGTGCACCCAATCTTCTTCACTGGGTCCTCCGCTGCTTCTAGTCACGCA
genomic: GTCTCCGTCAGACCCTTCGCCAGGTCTTCTTCGGCGGCGAGCACCGCCAGgtactccacc ... tttattatagGGTGTGCACCCAATCTTCTTCACTGGGTCCTCCGCTGCTTCTAGTCACGCA
EST: gi|211191926|gb|FL276014.1|FL276014
EST:     GTCTCCGTCAGACCCTTCGCCAGGTCTTCTTCGGCGGCGAGCACCG-CAG                         GGTGTGCACCCAATCTTCTTCACTGGGTCCTCCGCTGCTTCTAGTCACGCA
genomic: GTCTCCGTCAGACCCTTCGCCAGGTCTTCTTCGGCGGCGAGCACCGCCAGgtactccacc ... tttattatagGGTGTGCACCCAATCTTCTTCACTGGGTCCTCCGCTGCTTCTAGTCACGCA
EST: gi|211194322|gb|FL276024.1|FL276024
EST:     GTCTCCGTCAGACCCTTCGCCAGGTCTTCTTCGGCGGCGAGCACCGCHAG                         GGTGTGCACCCAATCTTCTTCACTGGGTCCTCCGCTGCTTCTAGTCACGCA
genomic: GTCTCCGTCAGACCCTTCGCCAGGTCTTCTTCGGCGGCGAGCACCGCCAGgtactccacc ... tttattatagGGTGTGCACCCAATCTTCTTCACTGGGTCCTCCGCTGCTTCTAGTCACGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttaataacaaatgtatgaacatgtattatgcatactaactttttttattatagGGTGTGCACCCAATCTTCTTCACTGGGTCCTCCGCTGCTTCTAGTCACGCATCTAAATCCGGAGTTGCCAGCATTCGCTTGAGGTGCCGGACCACAGCAC
                                  tactaac  putative branch site (score: 0)
                                        ctttttttatt  CT-rich tract
                         tattatgcatactaac  TA-rich tract